Last updated on 2019-12-07 00:53:38 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.2 | 51.99 | 36.17 | 88.16 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.2.2 | 32.23 | 26.26 | 58.49 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.2.2 | 109.91 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2.2 | 99.71 | OK | |||
| r-devel-windows-ix86+x86_64 | 1.2.2 | 104.00 | 58.00 | 162.00 | OK | |
| r-devel-windows-ix86+x86_64-gcc8 | 1.2.2 | 103.00 | 69.00 | 172.00 | OK | |
| r-patched-linux-x86_64 | 1.2.2 | 35.90 | 31.07 | 66.97 | OK | |
| r-patched-solaris-x86 | 1.2.2 | 107.70 | OK | |||
| r-release-linux-x86_64 | 1.2.2 | 33.08 | 31.27 | 64.35 | OK | |
| r-release-windows-ix86+x86_64 | 1.2.2 | 114.00 | 64.00 | 178.00 | OK | |
| r-release-osx-x86_64 | 1.2.2 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.2.2 | 95.00 | 82.00 | 177.00 | OK | |
| r-oldrel-osx-x86_64 | 1.2.2 | OK |
Version: 1.2.2
Check: tests
Result: ERROR
Running 'testthat.R' [5s/6s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(ModelMetrics)
Attaching package: 'ModelMetrics'
The following object is masked from 'package:base':
kappa
>
> test_check("ModelMetrics")
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
ModelMetrics
--- call from context ---
mlogLoss(y, xm)
--- call from argument ---
if (class(predicted) %in% c("data.frame")) {
predicted = as.matrix(predicted)
}
--- R stacktrace ---
where 1 at testthat/test_logloss.R#13: mlogLoss(y, xm)
where 2: eval(code, test_env)
where 3: eval(code, test_env)
where 4: withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error)
where 5: doTryCatch(return(expr), name, parentenv, handler)
where 6: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 7: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
where 8: doTryCatch(return(expr), name, parentenv, handler)
where 9: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),
names[nh], parentenv, handlers[[nh]])
where 10: tryCatchList(expr, classes, parentenv, handlers)
where 11: tryCatch(withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error), error = handle_fatal,
skip = function(e) {
})
where 12: test_code(desc, code, env = parent.frame())
where 13 at testthat/test_logloss.R#4: test_that("mlogLoss character/factor actual", {
Levs = 8
Size = 100
y = sample(1:Levs, Size, replace = TRUE)
xm = matrix(runif(Levs * Size), ncol = Levs)
xm = xm/rowSums(xm)
m1 <- mlogLoss(y, xm)
m2 <- mlogLoss(as.character(y), xm)
m3 <- mlogLoss(as.factor(y), xm)
expect_true(m1 == m2)
expect_true(m1 == m3)
})
where 14: eval(code, test_env)
where 15: eval(code, test_env)
where 16: withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error)
where 17: doTryCatch(return(expr), name, parentenv, handler)
where 18: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 19: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
where 20: doTryCatch(return(expr), name, parentenv, handler)
where 21: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),
names[nh], parentenv, handlers[[nh]])
where 22: tryCatchList(expr, classes, parentenv, handlers)
where 23: tryCatch(withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error), error = handle_fatal,
skip = function(e) {
})
where 24: test_code(NULL, exprs, env)
where 25: source_file(path, new.env(parent = env), chdir = TRUE, wrap = wrap)
where 26: force(code)
where 27: doWithOneRestart(return(expr), restart)
where 28: withOneRestart(expr, restarts[[1L]])
where 29: withRestarts(testthat_abort_reporter = function() NULL, force(code))
where 30: with_reporter(reporter = reporter, start_end_reporter = start_end_reporter,
{
reporter$start_file(basename(path))
lister$start_file(basename(path))
source_file(path, new.env(parent = env), chdir = TRUE,
wrap = wrap)
reporter$.end_context()
reporter$end_file()
})
where 31: FUN(X[[i]], ...)
where 32: lapply(paths, test_file, env = env, reporter = current_reporter,
start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap)
where 33: force(code)
where 34: doWithOneRestart(return(expr), restart)
where 35: withOneRestart(expr, restarts[[1L]])
where 36: withRestarts(testthat_abort_reporter = function() NULL, force(code))
where 37: with_reporter(reporter = current_reporter, results <- lapply(paths,
test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE,
load_helpers = FALSE, wrap = wrap))
where 38: test_files(paths, reporter = reporter, env = env, stop_on_failure = stop_on_failure,
stop_on_warning = stop_on_warning, wrap = wrap)
where 39: test_dir(path = test_path, reporter = reporter, env = env, filter = filter,
..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning,
wrap = wrap)
where 40: test_package_dir(package = package, test_path = test_path, filter = filter,
reporter = reporter, ..., stop_on_failure = stop_on_failure,
stop_on_warning = stop_on_warning, wrap = wrap)
where 41: test_check("ModelMetrics")
--- value of length: 2 type: logical ---
[1] FALSE FALSE
--- function from context ---
function (actual, predicted)
{
if (class(actual) %in% c("factor", "character")) {
actual = as.numeric(as.factor(actual))
}
if (class(predicted) %in% c("data.frame")) {
predicted = as.matrix(predicted)
}
eps <- 1e-15
predicted = pmax(pmin(predicted, 1 - eps), eps)
mlogLoss_(actual, predicted)
}
<bytecode: 0x4237ba0>
<environment: namespace:ModelMetrics>
--- function search by body ---
Function mlogLoss in namespace ModelMetrics has this body.
----------- END OF FAILURE REPORT --------------
-- 1. Error: mlogLoss character/factor actual (@test_logloss.R#13) ------------
the condition has length > 1
Backtrace:
1. ModelMetrics::mlogLoss(y, xm)
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
ModelMetrics
--- call from context ---
mlogLoss(y, xm)
--- call from argument ---
if (class(predicted) %in% c("data.frame")) {
predicted = as.matrix(predicted)
}
--- R stacktrace ---
where 1: mlogLoss(y, xm)
where 2: eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
where 3: withVisible(code)
where 4: withCallingHandlers(withVisible(code), warning = handle_warning,
message = handle_message)
where 5: force(code)
where 6: withr::with_output_sink(temp, withCallingHandlers(withVisible(code),
warning = handle_warning, message = handle_message))
where 7: .capture(act$val <- eval_bare(quo_get_expr(.quo), quo_get_env(.quo)),
...)
where 8: quasi_capture(enquo(object), NULL, evaluate_promise)
where 9 at testthat/test_logloss.R#33: expect_silent(res1 <- mlogLoss(y, xm))
where 10: eval(code, test_env)
where 11: eval(code, test_env)
where 12: withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error)
where 13: doTryCatch(return(expr), name, parentenv, handler)
where 14: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 15: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
where 16: doTryCatch(return(expr), name, parentenv, handler)
where 17: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),
names[nh], parentenv, handlers[[nh]])
where 18: tryCatchList(expr, classes, parentenv, handlers)
where 19: tryCatch(withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error), error = handle_fatal,
skip = function(e) {
})
where 20: test_code(desc, code, env = parent.frame())
where 21 at testthat/test_logloss.R#23: test_that("mlogLoss different classes", {
Levs = 8
Size = 100
y = sample(1:Levs, Size, replace = TRUE)
xm = matrix(runif(Levs * Size), ncol = Levs)
xm = xm/rowSums(xm)
expect_silent(res1 <- mlogLoss(y, xm))
expect_true(!is.nan(res1))
expect_silent(res2 <- mlogLoss(y, as.data.frame(xm)))
expect_true(res1 == res2)
expect_true(all(res1 == res2))
expect_silent(res3 <- mlogLoss(as.character(y), as.data.frame(xm)))
expect_true(res1 == res3)
expect_true(all(res1 == res3))
expect_silent(res4 <- mlogLoss(as.factor(y), as.data.frame(xm)))
expect_true(res1 == res4)
expect_true(all(res1 == res4))
eps <- 1e-15
classes <- LETTERS[1:3]
test_dat1 <- data.frame(obs = c("A", "A", "A", "B", "B",
"C"), pred = c("A", "A", "A", "B", "B", "C"), A = c(1,
0.8, 0.51, 0.1, 0.2, 0.3), B = c(0, 0.05, 0.29, 0.8,
0.6, 0.3), C = c(0, 0.15, 0.2, 0.1, 0.2, 0.4))
expected1 <- log(1 - eps) + log(0.8) + log(0.51) + log(0.8) +
log(0.6) + log(0.4)
expected1 <- -expected1/nrow(test_dat1)
result1 <- mlogLoss(test_dat1$obs, test_dat1[, 3:5])
expect_equal(result1, expected1)
})
where 22: eval(code, test_env)
where 23: eval(code, test_env)
where 24: withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error)
where 25: doTryCatch(return(expr), name, parentenv, handler)
where 26: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 27: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
where 28: doTryCatch(return(expr), name, parentenv, handler)
where 29: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),
names[nh], parentenv, handlers[[nh]])
where 30: tryCatchList(expr, classes, parentenv, handlers)
where 31: tryCatch(withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error), error = handle_fatal,
skip = function(e) {
})
where 32: test_code(NULL, exprs, env)
where 33: source_file(path, new.env(parent = env), chdir = TRUE, wrap = wrap)
where 34: force(code)
where 35: doWithOneRestart(return(expr), restart)
where 36: withOneRestart(expr, restarts[[1L]])
where 37: withRestarts(testthat_abort_reporter = function() NULL, force(code))
where 38: with_reporter(reporter = reporter, start_end_reporter = start_end_reporter,
{
reporter$start_file(basename(path))
lister$start_file(basename(path))
source_file(path, new.env(parent = env), chdir = TRUE,
wrap = wrap)
reporter$.end_context()
reporter$end_file()
})
where 39: FUN(X[[i]], ...)
where 40: lapply(paths, test_file, env = env, reporter = current_reporter,
start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap)
where 41: force(code)
where 42: doWithOneRestart(return(expr), restart)
where 43: withOneRestart(expr, restarts[[1L]])
where 44: withRestarts(testthat_abort_reporter = function() NULL, force(code))
where 45: with_reporter(reporter = current_reporter, results <- lapply(paths,
test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE,
load_helpers = FALSE, wrap = wrap))
where 46: test_files(paths, reporter = reporter, env = env, stop_on_failure = stop_on_failure,
stop_on_warning = stop_on_warning, wrap = wrap)
where 47: test_dir(path = test_path, reporter = reporter, env = env, filter = filter,
..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning,
wrap = wrap)
where 48: test_package_dir(package = package, test_path = test_path, filter = filter,
reporter = reporter, ..., stop_on_failure = stop_on_failure,
stop_on_warning = stop_on_warning, wrap = wrap)
where 49: test_check("ModelMetrics")
--- value of length: 2 type: logical ---
[1] FALSE FALSE
--- function from context ---
function (actual, predicted)
{
if (class(actual) %in% c("factor", "character")) {
actual = as.numeric(as.factor(actual))
}
if (class(predicted) %in% c("data.frame")) {
predicted = as.matrix(predicted)
}
eps <- 1e-15
predicted = pmax(pmin(predicted, 1 - eps), eps)
mlogLoss_(actual, predicted)
}
<bytecode: 0x4237ba0>
<environment: namespace:ModelMetrics>
--- function search by body ---
Function mlogLoss in namespace ModelMetrics has this body.
----------- END OF FAILURE REPORT --------------
-- 2. Error: mlogLoss different classes (@test_logloss.R#33) ------------------
the condition has length > 1
Backtrace:
1. testthat::expect_silent(res1 <- mlogLoss(y, xm))
9. ModelMetrics::mlogLoss(y, xm)
== testthat results ===========================================================
[ OK: 59 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 2 ]
1. Error: mlogLoss character/factor actual (@test_logloss.R#13)
2. Error: mlogLoss different classes (@test_logloss.R#33)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.2.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [2s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ModelMetrics)
Attaching package: 'ModelMetrics'
The following object is masked from 'package:base':
kappa
>
> test_check("ModelMetrics")
── 1. Failure: mlogLoss different classes (@test_logloss.R#33) ────────────────
`res1 <- mlogLoss(y, xm)` produced warnings.
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 72 | SKIPPED: 1 | WARNINGS: 3 | FAILED: 1 ]
1. Failure: mlogLoss different classes (@test_logloss.R#33)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc