CRAN Package Check Results for Package dmdScheme

Last updated on 2021-01-17 00:48:08 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.6 9.26 767.86 777.12 OK
r-devel-linux-x86_64-debian-gcc 1.2.6 7.24 503.78 511.02 OK
r-devel-linux-x86_64-fedora-clang 1.2.6 903.25 OK
r-devel-linux-x86_64-fedora-gcc 1.2.6 151.65 NOTE
r-devel-windows-ix86+x86_64 1.2.6 19.00 151.00 170.00 ERROR
r-patched-linux-x86_64 1.2.6 8.90 665.54 674.44 OK
r-patched-solaris-x86 1.2.6 1411.60 OK
r-release-linux-x86_64 1.2.6 9.22 668.72 677.94 OK
r-release-macos-x86_64 1.2.6 OK
r-release-windows-ix86+x86_64 1.2.6 20.00 138.00 158.00 OK
r-oldrel-macos-x86_64 1.2.6 OK
r-oldrel-windows-ix86+x86_64 1.2.6 23.00 133.00 156.00 OK

Check Details

Version: 1.2.6
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     ‘emeScheme’
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.2.6
Check: tests
Result: ERROR
     Running 'testthat.R' [22s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(magrittr)
    
     Attaching package: 'magrittr'
    
     The following objects are masked from 'package:testthat':
    
     equals, is_less_than, not
    
     > ##
     > library(dmdScheme)
    
     #############################################
     The cache will be in a temporary location and be deleted when you quit R.
     It is located at
     D:\temp\Rtmp4GHRk5\dmdScheme_1262416761e6f
     To make it permanent, call
     cache(createPermanent = TRUE)
     and restart R
     and a permanent cache will be created which will survive restarts.
     #############################################
    
    
     trying URL 'https://github.com/Exp-Micro-Ecol-Hub/dmdSchemeRepository/raw/master/schemes/dmdScheme_0.9.9.tar.gz'
     Content type 'application/octet-stream' length 39383 bytes (38 KB)
     ==================================================
     downloaded 38 KB
    
     Scheme definition `D:\temp\Rtmp4GHRk5\file126241908656/dmdScheme_0.9.9.tar.gz, installed with
     name: dmdScheme
     version: 0.9.9
     Theme switched to dmdScheme_0.9.9
     > ##
     > test_check("dmdScheme")
     == Skipped tests ===============================================================
     * Does fail in covr testing but not in testing! (1)
     * On Windows (2)
    
     == Warnings ====================================================================
     -- Warning (test-07-print.dmdScheme.R:31:5): print.dmdScheme() gives the correct output TTF --
     New reference output is not UTF-8 encoded
     Backtrace:
     1. testthat::expect_known_output(...) test-07-print.dmdScheme.R:31:4
     2. testthat:::compare_file(...)
     -- Warning (test-07-print.dmdScheme.R:42:5): print.dmdScheme() gives the correct output TTT --
     New reference output is not UTF-8 encoded
     Backtrace:
     1. testthat::expect_known_output(...) test-07-print.dmdScheme.R:42:4
     2. testthat:::compare_file(...)
     -- Warning (test-07-print.dmdScheme.R:53:5): print.dmdScheme() gives the correct output with no data in some TTT --
     New reference output is not UTF-8 encoded
     Backtrace:
     1. testthat::expect_known_output(...) test-07-print.dmdScheme.R:53:4
     2. testthat:::compare_file(...)
    
     == Failed tests ================================================================
     -- Failure (test-07-print.dmdScheme.R:31:5): print.dmdScheme() gives the correct output TTF --
     Results have changed from known value recorded in 'ref-07-print.dmdScheme.TTF.txt'.
    
     old[7:13] vs new[7:13]
     "XA propertyName: MdBibliometric"
     "XA suggestedValues: NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | Creative Commons Attribution 4.0 International"
     "XA allowedValues: Dataset, Image - Photo, Video / Audio | NA | NA | NA | NA | NA | NA | NA | NA | Open, Embargoed, Restricted, Closed | NA | NA"
     - "XA Description: The type of the data. Needs tobe one as specified in the allowedValues | The DOI of the dataset. Usually the reserved DOI. | Date of publication of the data package in the format YYYY-MM-DD | Title of the data package | Short description of the data deposited | The version of the dataset. Usually empty, but the version should be specified if the dataset is augmented or corrected. | The language of the dataset. E.g. \"eng\", \"fr\", â<c2><80>¦ | Keywords describing the dataset | Some additional info, which does not fit in any category. | Access rights to the data, normally Open or Embargoed. | if Embargoed, the date until embargoed (YYYY-MM-DD), if Restricted, conditions under which access is granted to the data | Should normally be \"Creative Commons Attribution 4.0 International\" (CCA4)"
     + "XA Description: The type of the data. Needs tobe one as specified in the allowedValues | The DOI of the dataset. Usually the reserved DOI. | Date of publication of the data package in the format YYYY-MM-DD | Title of the data package | Short description of the data deposited | The version of the dataset. Usually empty, but the version should be specified if the dataset is augmented or corrected. | The language of the dataset. E.g. \"eng\", \"fr\", <c2><85> | Keywords describing the dataset | Some additional info, which does not fit in any category. | Access rights to the data, normally Open or Embargoed. | if Embargoed, the date until embargoed (YYYY-MM-DD), if Restricted, conditions under which access is granted to the data | Should normally be \"Creative Commons Attribution 4.0 International\" (CCA4)"
     "XA row.names: 1"
     "XA class: dmdSchemeData | data.frame"
     ""
    
     old[18:25] vs new[18:25]
     ""
     "XA propertyName: MdAuthors"
     "XA suggestedValues: NA | NA | NA | NA | NA | NA"
     - "XA allowedValues: NA | NA | NA | NA | NA | Conceptualization, Data curation, Formal Analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing â<c2><80><c2><93> original draft, Writing â<c2><80><c2><93> review & editing"
     + "XA allowedValues: NA | NA | NA | NA | NA | Conceptualization, Data curation, Formal Analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing <c2><96> original draft, Writing <c2><96> review & editing"
     - "XA Description: Just an id - can be a number | Family name of the author | Given name(s) of the authors | Affiliation of the author | ORCID (Open Researcher and Contributor ID, as issued by https://orcid.org) | Role of the author, using the CRediT â<c2><80><c2><93> Contributor Roles Taxonomy at https://casrai.org/credit/. Can be more than one."
     + "XA Description: Just an id - can be a number | Family name of the author | Given name(s) of the authors | Affiliation of the author | ORCID (Open Researcher and Contributor ID, as issued by https://orcid.org) | Role of the author, using the CRediT <c2><96> Contributor Roles Taxonomy at https://casrai.org/credit/. Can be more than one."
     "XA row.names: 1 | 2"
     "XA class: dmdSchemeData | data.frame"
     ""
     -- Failure (test-07-print.dmdScheme.R:42:5): print.dmdScheme() gives the correct output TTT --
     Results have changed from known value recorded in 'ref-07-print.dmdScheme.TTT.txt'.
    
     old[9:15] vs new[9:15]
     "XA propertyName: MdBibliometric"
     "XA suggestedValues: NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | Creative Commons Attribution 4.0 International"
     "XA allowedValues: Dataset, Image - Photo, Video / Audio | NA | NA | NA | NA | NA | NA | NA | NA | Open, Embargoed, Restricted, Closed | NA | NA"
     - "XA Description: The type of the data. Needs tobe one as specified in the allowedValues | The DOI of the dataset. Usually the reserved DOI. | Date of publication of the data package in the format YYYY-MM-DD | Title of the data package | Short description of the data deposited | The version of the dataset. Usually empty, but the version should be specified if the dataset is augmented or corrected. | The language of the dataset. E.g. \"eng\", \"fr\", â<c2><80>¦ | Keywords describing the dataset | Some additional info, which does not fit in any category. | Access rights to the data, normally Open or Embargoed. | if Embargoed, the date until embargoed (YYYY-MM-DD), if Restricted, conditions under which access is granted to the data | Should normally be \"Creative Commons Attribution 4.0 International\" (CCA4)"
     + "XA Description: The type of the data. Needs tobe one as specified in the allowedValues | The DOI of the dataset. Usually the reserved DOI. | Date of publication of the data package in the format YYYY-MM-DD | Title of the data package | Short description of the data deposited | The version of the dataset. Usually empty, but the version should be specified if the dataset is augmented or corrected. | The language of the dataset. E.g. \"eng\", \"fr\", <c2><85> | Keywords describing the dataset | Some additional info, which does not fit in any category. | Access rights to the data, normally Open or Embargoed. | if Embargoed, the date until embargoed (YYYY-MM-DD), if Restricted, conditions under which access is granted to the data | Should normally be \"Creative Commons Attribution 4.0 International\" (CCA4)"
     ""
     " uploadType doi publicationDate title description version language"
     "D 1 <NA> <NA> <NA> <NA> <NA> <NA> <NA>"
    
     old[25:32] vs new[25:32]
     "XA class: dmdSchemeData | data.frame"
     "XA propertyName: MdAuthors"
     "XA suggestedValues: NA | NA | NA | NA | NA | NA"
     - "XA allowedValues: NA | NA | NA | NA | NA | Conceptualization, Data curation, Formal Analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing â<c2><80><c2><93> original draft, Writing â<c2><80><c2><93> review & editing"
     + "XA allowedValues: NA | NA | NA | NA | NA | Conceptualization, Data curation, Formal Analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing <c2><96> original draft, Writing <c2><96> review & editing"
     - "XA Description: Just an id - can be a number | Family name of the author | Given name(s) of the authors | Affiliation of the author | ORCID (Open Researcher and Contributor ID, as issued by https://orcid.org) | Role of the author, using the CRediT â<c2><80><c2><93> Contributor Roles Taxonomy at https://casrai.org/credit/. Can be more than one."
     + "XA Description: Just an id - can be a number | Family name of the author | Given name(s) of the authors | Affiliation of the author | ORCID (Open Researcher and Contributor ID, as issued by https://orcid.org) | Role of the author, using the CRediT <c2><96> Contributor Roles Taxonomy at https://casrai.org/credit/. Can be more than one."
     ""
     " authorID familyName givenName affiliation orcid role"
     "D 1 <NA> <NA> <NA> <NA> <NA> <NA>"
     -- Failure (test-07-print.dmdScheme.R:53:5): print.dmdScheme() gives the correct output with no data in some TTT --
     Results have changed from known value recorded in 'ref-07-print.dmdScheme.TTT.EMPTY.txt'.
    
     old[9:15] vs new[9:15]
     "XA propertyName: MdBibliometric"
     "XA suggestedValues: NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | Creative Commons Attribution 4.0 International"
     "XA allowedValues: Dataset, Image - Photo, Video / Audio | NA | NA | NA | NA | NA | NA | NA | NA | Open, Embargoed, Restricted, Closed | NA | NA"
     - "XA Description: The type of the data. Needs tobe one as specified in the allowedValues | The DOI of the dataset. Usually the reserved DOI. | Date of publication of the data package in the format YYYY-MM-DD | Title of the data package | Short description of the data deposited | The version of the dataset. Usually empty, but the version should be specified if the dataset is augmented or corrected. | The language of the dataset. E.g. \"eng\", \"fr\", â<c2><80>¦ | Keywords describing the dataset | Some additional info, which does not fit in any category. | Access rights to the data, normally Open or Embargoed. | if Embargoed, the date until embargoed (YYYY-MM-DD), if Restricted, conditions under which access is granted to the data | Should normally be \"Creative Commons Attribution 4.0 International\" (CCA4)"
     + "XA Description: The type of the data. Needs tobe one as specified in the allowedValues | The DOI of the dataset. Usually the reserved DOI. | Date of publication of the data package in the format YYYY-MM-DD | Title of the data package | Short description of the data deposited | The version of the dataset. Usually empty, but the version should be specified if the dataset is augmented or corrected. | The language of the dataset. E.g. \"eng\", \"fr\", <c2><85> | Keywords describing the dataset | Some additional info, which does not fit in any category. | Access rights to the data, normally Open or Embargoed. | if Embargoed, the date until embargoed (YYYY-MM-DD), if Restricted, conditions under which access is granted to the data | Should normally be \"Creative Commons Attribution 4.0 International\" (CCA4)"
     ""
     " uploadType doi publicationDate title description version language"
     "D 1 <NA> <NA> <NA> <NA> <NA> <NA> <NA>"
    
     old[25:32] vs new[25:32]
     "XA class: dmdSchemeData | data.frame"
     "XA propertyName: MdAuthors"
     "XA suggestedValues: NA | NA | NA | NA | NA | NA"
     - "XA allowedValues: NA | NA | NA | NA | NA | Conceptualization, Data curation, Formal Analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing â<c2><80><c2><93> original draft, Writing â<c2><80><c2><93> review & editing"
     + "XA allowedValues: NA | NA | NA | NA | NA | Conceptualization, Data curation, Formal Analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing <c2><96> original draft, Writing <c2><96> review & editing"
     - "XA Description: Just an id - can be a number | Family name of the author | Given name(s) of the authors | Affiliation of the author | ORCID (Open Researcher and Contributor ID, as issued by https://orcid.org) | Role of the author, using the CRediT â<c2><80><c2><93> Contributor Roles Taxonomy at https://casrai.org/credit/. Can be more than one."
     + "XA Description: Just an id - can be a number | Family name of the author | Given name(s) of the authors | Affiliation of the author | ORCID (Open Researcher and Contributor ID, as issued by https://orcid.org) | Role of the author, using the CRediT <c2><96> Contributor Roles Taxonomy at https://casrai.org/credit/. Can be more than one."
     ""
     " authorID familyName givenName affiliation orcid role"
     "D 1 <NA> <NA> <NA> <NA> <NA> <NA>"
    
     [ FAIL 3 | WARN 3 | SKIP 3 | PASS 48 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-windows-ix86+x86_64