Last updated on 2023-10-01 08:52:00 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.1 | 85.71 | 215.13 | 300.84 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.1 | 60.53 | 158.90 | 219.43 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.3 | 385.50 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.1 | 429.05 | OK | |||
| r-devel-windows-x86_64 | 1.0.1 | 65.00 | 205.00 | 270.00 | NOTE | |
| r-patched-linux-x86_64 | 1.0.1 | 64.80 | 208.43 | 273.23 | OK | |
| r-release-linux-x86_64 | 1.0.1 | 61.27 | 211.06 | 272.33 | OK | |
| r-release-macos-arm64 | 1.0.1 | 74.00 | ERROR | |||
| r-release-macos-x86_64 | 1.0.3 | 222.00 | NOTE | |||
| r-release-windows-x86_64 | 1.0.3 | 58.00 | 171.00 | 229.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.0.1 | 68.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.0.1 | 197.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 1.0.1 | 79.00 | 251.00 | 330.00 | NOTE |
Version: 1.0.3
Check: installed package size
Result: NOTE
installed size is 6.2Mb
sub-directories of 1Mb or more:
data 2.7Mb
doc 2.7Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-macos-x86_64, r-release-windows-x86_64
Version: 1.0.1
Check: installed package size
Result: NOTE
installed size is 6.9Mb
sub-directories of 1Mb or more:
data 2.8Mb
doc 2.6Mb
libs 1.3Mb
Flavors: r-devel-windows-x86_64, r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.0.1
Check: examples
Result: ERROR
Running examples in ‘harmony-Ex.R’ failed
The error most likely occurred in:
> ### Name: RunHarmony.default
> ### Title: Main Harmony interface
> ### Aliases: RunHarmony.default
>
> ### ** Examples
>
>
>
> ## By default, Harmony inputs a cell embedding matrix
> ## Not run:
> ##D harmony_embeddings <- RunHarmony(cell_embeddings, meta_data, 'dataset')
> ## End(Not run)
>
> ## If PCA is the input, the PCs need to be scaled
> data(cell_lines_small)
> pca_matrix <- cell_lines_small$scaled_pcs
> meta_data <- cell_lines_small$meta_data
> harmony_embeddings <- RunHarmony(pca_matrix, meta_data, 'dataset')
Error in if ((ncores != as.integer(ncores)) || (ncores < 1) || (ncores > :
missing value where TRUE/FALSE needed
Calls: RunHarmony -> RunHarmony.default
Execution halted
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [1s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_integration.R:5:1'): (code run outside of `test_that()`) ───────
Error in `if ((ncores != as.integer(ncores)) || (ncores < 1) || (ncores >
max.cores)) {
stop(paste0("Invalid number of ncores provided!", "Acceptable range of ncores: 1 -",
max.cores))
}`: missing value where TRUE/FALSE needed
Backtrace:
▆
1. ├─harmony::RunHarmony(...) at test_integration.R:5:0
2. └─harmony:::RunHarmony.default(...)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘Seurat.Rmd’ using rmarkdown
Calculating gene variances
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating gene variances
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Quitting from lines 82-86 [unnamed-chunk-5] (Seurat.Rmd)
Error: processing vignette 'Seurat.Rmd' failed with diagnostics:
missing value where TRUE/FALSE needed
--- failed re-building ‘Seurat.Rmd’
--- re-building ‘detailedWalkthrough.Rmd’ using rmarkdown
Quitting from lines 156-170 [unnamed-chunk-4] (detailedWalkthrough.Rmd)
Error: processing vignette 'detailedWalkthrough.Rmd' failed with diagnostics:
missing value where TRUE/FALSE needed
--- failed re-building ‘detailedWalkthrough.Rmd’
--- re-building ‘quickstart.Rmd’ using rmarkdown
Quitting from lines 141-145 [unnamed-chunk-6] (quickstart.Rmd)
Error: processing vignette 'quickstart.Rmd' failed with diagnostics:
missing value where TRUE/FALSE needed
--- failed re-building ‘quickstart.Rmd’
SUMMARY: processing the following files failed:
‘Seurat.Rmd’ ‘detailedWalkthrough.Rmd’ ‘quickstart.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64