CRAN Package Check Results for Package malariaAtlas

Last updated on 2020-05-29 01:50:13 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.0 7.76 113.41 121.17 OK
r-devel-linux-x86_64-debian-gcc 1.0.0 6.62 84.13 90.75 OK
r-devel-linux-x86_64-fedora-clang 1.0.0 143.20 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0.0 138.94 NOTE
r-devel-windows-ix86+x86_64 1.0.0 22.00 153.00 175.00 OK
r-patched-linux-x86_64 1.0.0 6.37 109.18 115.55 OK
r-patched-solaris-x86 1.0.0 136.60 WARN
r-release-linux-x86_64 1.0.0 7.24 110.73 117.97 OK
r-release-osx-x86_64 1.0.0 NOTE
r-release-windows-ix86+x86_64 1.0.0 16.00 292.00 308.00 OK
r-oldrel-osx-x86_64 1.0.0 NOTE
r-oldrel-windows-ix86+x86_64 1.0.0 15.00 167.00 182.00 OK

Check Details

Version: 1.0.0
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘grid’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.0.0
Check: foreign function calls
Result: NOTE
    Warning in find_bad_exprs(exprs[[i]]) :
     it is not known that wchar_t is Unicode on this platform
    Warning in find_bad_exprs(exprs[[i]]) :
     it is not known that wchar_t is Unicode on this platform
    Warning in find_bad_exprs(exprs[[i]]) :
     it is not known that wchar_t is Unicode on this platform
    Warning in find_bad_exprs(exprs[[i]]) :
     it is not known that wchar_t is Unicode on this platform
    See chapter ‘System and foreign language interfaces’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-patched-solaris-x86

Version: 1.0.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘overview.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: ggplot2
    Creating list of countries for which MAP data is available, please wait...
    Countries with PR Data:
     Kenya (KEN)
     Afghanistan (AFG)
     Somalia (SOM)
     Indonesia (IDN)
     Zimbabwe (ZWE)
     Ethiopia (ETH)
     Burkina Faso (BFA)
     Madagascar (MDG)
     India (IND)
     Sudan (SDN)
     Yemen (YEM)
     Tanzania (TZA)
     Cambodia (KHM)
     Malawi (MWI)
     Zambia (ZMB)
     Senegal (SEN)
     Uganda (UGA)
     Bangladesh (BGD)
     Central African Republic (CAF)
     Colombia (COL)
     Togo (TGO)
     Vietnam (VNM)
     Mozambique (MOZ)
     Burundi (BDI)
     Papua New Guinea (PNG)
     Venezuela (VEN)
     Comoros (COM)
     Solomon Islands (SLB)
     Pakistan (PAK)
     Ghana (GHA)
     Guinea (GIN)
     Bolivia (BOL)
     Philippines (PHL)
     Gambia (GMB)
     Niger (NER)
     Nigeria (NGA)
     Eritrea (ERI)
     Guinea-Bissau (GNB)
     Côte d'Ivoire (CIV)
     Nepal (NPL)
     Thailand (THA)
     Djibouti (DJI)
     Democratic Republic of the Congo (COD)
     South Africa (ZAF)
     Namibia (NAM)
     Vanuatu (VUT)
     China (CHN)
     Tajikistan (TJK)
     Botswana (BWA)
     Swaziland (SWZ)
     Brazil (BRA)
     Congo (COG)
     Cameroon (CMR)
     Equatorial Guinea (GNQ)
     Suriname (SUR)
     Liberia (LBR)
     Haiti (HTI)
     Morocco (MAR)
     Myanmar (MMR)
     Mayotte (MYT)
     Benin (BEN)
     Cape Verde (CPV)
     Laos (LAO)
     Malaysia (MYS)
     Peru (PER)
     Mali (MLI)
     Gabon (GAB)
     Sri Lanka (LKA)
     French Guiana (GUF)
     Iraq (IRQ)
     Saudi Arabia (SAU)
     Honduras (HND)
     Sao Tome And Principe (STP)
     Turkey (TUR)
     Ecuador (ECU)
     South Sudan (SSD)
     Timor-Leste (TLS)
     Sierra Leone (SLE)
     Chad (TCD)
     Mauritania (MRT)
     Rwanda (RWA)
     Mexico (MEX)
     Costa Rica (CRI)
     Angola (AGO)
     Nicaragua (NIC)
     Bhutan (BTN)
    Creating list of countries for which MAP data is available, please wait...
    Countries with vector occurrence data:
     Kenya (KEN)
     Afghanistan (AFG)
     Somalia (SOM)
     Indonesia (IDN)
     Zimbabwe (ZWE)
     Ethiopia (ETH)
     Burkina Faso (BFA)
     Madagascar (MDG)
     India (IND)
     Sudan (SDN)
     Yemen (YEM)
     Tanzania (TZA)
     Cambodia (KHM)
     Malawi (MWI)
     Zambia (ZMB)
     Senegal (SEN)
     Uganda (UGA)
     Bangladesh (BGD)
     Central African Republic (CAF)
     Colombia (COL)
     Togo (TGO)
     Vietnam (VNM)
     Mozambique (MOZ)
     Burundi (BDI)
     Papua New Guinea (PNG)
     Venezuela (VEN)
     Comoros (COM)
     Solomon Islands (SLB)
     Pakistan (PAK)
     Ghana (GHA)
     Guinea (GIN)
     Bolivia (BOL)
     Philippines (PHL)
     Gambia (GMB)
     Niger (NER)
     Nigeria (NGA)
     Eritrea (ERI)
     Guinea-Bissau (GNB)
     Côte d'Ivoire (CIV)
     Nepal (NPL)
     Thailand (THA)
     Djibouti (DJI)
     Democratic Republic of the Congo (COD)
     South Africa (ZAF)
     Namibia (NAM)
     Vanuatu (VUT)
     China (CHN)
     Tajikistan (TJK)
     Botswana (BWA)
     Swaziland (SWZ)
     Brazil (BRA)
     Congo (COG)
     Cameroon (CMR)
     Equatorial Guinea (GNQ)
     Suriname (SUR)
     Liberia (LBR)
     Haiti (HTI)
     Morocco (MAR)
     Myanmar (MMR)
     Mayotte (MYT)
     Benin (BEN)
     Cape Verde (CPV)
     Laos (LAO)
     Malaysia (MYS)
     Peru (PER)
     Mali (MLI)
     Gabon (GAB)
     Sri Lanka (LKA)
     French Guiana (GUF)
     Iraq (IRQ)
     Saudi Arabia (SAU)
     Honduras (HND)
     Sao Tome And Principe (STP)
     Turkey (TUR)
     Ecuador (ECU)
     South Sudan (SSD)
     Timor-Leste (TLS)
     Sierra Leone (SLE)
     Chad (TCD)
     Mauritania (MRT)
     Rwanda (RWA)
     Mexico (MEX)
     Costa Rica (CRI)
     Angola (AGO)
     Nicaragua (NIC)
     Bhutan (BTN)
    Downloading list of available rasters...
    Rasters Available for Download:
     A global friction surface enumerating land-based travel speed for a nominal year 2015
     A global map of travel time to cities to assess inequalities in accessibility in 2015
     All-cause fever
     Anopheles aconitus Dönitz, 1902
     Anopheles albimanus Wiedemann, 1820
     Anopheles albitarsis species complex
     Anopheles annularis van der Wulp, 1884
     Anopheles aquasalis Curry, 1932
     Anopheles arabiensis Patton, 1905
     Anopheles arabiensis Patton, 1905
     Anopheles atroparvus van Thiel, 1927
     Anopheles balabacensis Baisas, 1936
     Anopheles coluzzii
     Anopheles culicifacies species complex
     Anopheles darlingi Root, 1926
     Anopheles dirus
     Anopheles dirus species complex
     Anopheles dirus species complex
     Anopheles farauti species complex
     Anopheles flavirostris (Ludlow, 1914)
     Anopheles fluviatilis species complex
     Anopheles freeborni Aitken, 1939
     Anopheles funestus
     Anopheles funestus Giles, 1900
     Anopheles funestus Group Giles, 1900
     Anopheles funestus Subgroup Giles, 1900
     Anopheles gambiae
     Anopheles gambiae Giles, 1902
     Anopheles gambiae species complex
     Anopheles koliensis Owen, 1945
     Anopheles labranchiae Falleroni, 1926
     Anopheles lesteri Baisas & Hu, 1936
     Anopheles leucosphyrus and Anopheles latens
     Anopheles leucosphyrus complex
     Anopheles leucosphyrus group
     Anopheles maculatus Group
     Anopheles marajoara Galvão & Damasceno, 1942
     Anopheles melas Theobald, 1903
     Anopheles melas Theobald, 1903
     Anopheles merus Dönitz, 1902
     Anopheles merus Dönitz, 1902
     Anopheles messeae Falleroni, 1926
     Anopheles minimus species complex
     Anopheles moucheti Evans, 1925
     Anopheles nili species complex
     Anopheles nuneztovari species complex
     Anopheles pseudopuncti species complex
     Anopheles punctulatus species complex
     Anopheles quadrimacul Say, 1824
     Anopheles sacharovi Favre, 1903
     Anopheles sergentii species complex
     Anopheles sinensis species complex
     Anopheles stephensi Grassi, 1899
     Anopheles subpictus species complex
     Anopheles sundaicus species complex
     Anopheles superpictus Grassi, 1899
     Artemisinin-based combination therapy (ACT) coverage
     Dominant Vectors
     Duffy Negativity Phenotype Frequency
     G6PD Deficiency Allele Frequency
     HbC (Haemoglobin C) Allele Frequency
     HbS (Sickle Haemoglobin) Allele Frequency
     Indoor residual spraying (IRS) coverage
     Insecticide-treated bednet (ITN) coverage
     Macaca fascicularis
     Macaca leonina
     Macaca nemestrina
     Malaria-attributable fever as a proportion of all-cause fever
     Malaria-attributable fever as a proportion of malaria-positive fever
     Malaria-positive fever as a proportion of all-cause fever
     Non-malarial fever
     Plasmodium falciparum Incidence.
     Plasmodium falciparum Incidence
     Plasmodium falciparum Mortality Rate
     Plasmodium falciparum PR2 - 10
     Plasmodium falciparum PR2-10
     Plasmodium falciparum Spatial Limits
     Plasmodium falciparum Support
     Plasmodium falciparum Temperature Suitability
     Plasmodium knowlesi Risk
     Plasmodium vivax Cases
     Plasmodium vivax Incidence
     Plasmodium vivax PR1-99
     Plasmodium vivax Relapse
     Plasmodium vivax Spatial Limits
     Plasmodium vivax Support
     Plasmodium vivax Temperature Suitability
     Prevalence of improved housing 2000
     Prevalence of improved housing 2015
     Secondary Dominant Vectors
    Shapefiles Available to Download for:
     Afghanistan
     Albania
     Algeria
     American Samoa
     Andorra
     Angola
     Anguilla
     Antarctica
     Antigua and Barbuda
     Argentina
     Armenia
     Aruba
     Australia
     Austria
     Azerbaijan
     Bahamas
     Bahrain
     Bangladesh
     Barbados
     Belarus
     Belgium
     Belize
     Benin
     Bermuda
     Bhutan
     Bolivia
     Bosnia and Herzegovina
     Botswana
     Bouvet Island
     Brazil
     British Indian Ocean Territory
     British Virgin Islands
     Brunei Darussalam
     Bulgaria
     Burkina Faso
     Burundi
     Cambodia
     Cameroon
     Canada
     Cape Verde
     Cayman Islands
     Central African Republic
     Chad
     Chile
     China
     Christmas Island
     Clipperton Island
     Cocos (Keeling) Islands
     Colombia
     Comoros
     Congo
     Cook Islands
     Costa Rica
     Croatia
     Cuba
     Cyprus
     Czech Republic
     Côte d'Ivoire
     Democratic Republic of the Congo
     Denmark
     Dhekelia and Akrotiri SBA
     Djibouti
     Dominica
     Dominican Republic
     Ecuador
     Egypt
     El Salvador
     Equatorial Guinea
     Eritrea
     Estonia
     Ethiopia
     Falkland Islands
     Faroe Islands
     Fiji
     Finland
     France
     French Guiana
     French Polynesia
     French Southern and Antarctic Territories
     Gabon
     Gambia
     Georgia
     Germany
     Ghana
     Gibraltar
     Greece
     Greenland
     Grenada
     Guadeloupe
     Guam
     Guatemala
     Guernsey
     Guinea
     Guinea-Bissau
     Guyana
     Haiti
     Heard Island and McDonald Islands
     Honduras
     Hong Kong
     Hungary
     Iceland
     India
     Indonesia
     Iran
     Iraq
     Ireland
     Isle of Man
     Israel
     Italy
     Jamaica
     Japan
     Jersey
     Jordan
     Kazakhstan
     Kenya
     Kiribati
     Kuwait
     Kyrgyzstan
     Laos
     Latvia
     Lebanon
     Lesotho
     Liberia
     Libya
     Liechtenstein
     Lithuania
     Luxembourg
     Macau
     Macedonia
     Madagascar
     Malawi
     Malaysia
     Maldives
     Mali
     Malta
     Marshall Islands
     Martinique
     Mauritania
     Mauritius
     Mayotte
     Mexico
     Micronesia
     Moldova
     Monaco
     Mongolia
     Montenegro
     Montserrat
     Morocco
     Mozambique
     Myanmar
     Namibia
     Nauru
     Nepal
     Netherlands
     Netherlands Antilles
     New Caledonia
     New Zealand
     Nicaragua
     Niger
     Nigeria
     Niue
     Norfolk Island
     North Korea
     Northern Mariana Islands
     Norway
     Oman
     Pakistan
     Palau
     Palestinian Territories
     Panama
     Papua New Guinea
     Paracel Islands
     Paraguay
     Peru
     Philippines
     Pitcairn
     Poland
     Portugal
     Puerto Rico
     Qatar
     Romania
     Russia
     Rwanda
     Réunion
     Saint Helena
     Saint Kitts and Nevis
     Saint Lucia
     Saint Pierre et Miquelon
     Saint Vincent and the Grenadines
     Samoa
     San Marino
     Sao Tome And Principe
     Saudi Arabia
     Scarborough Reef
     Senegal
     Serbia
     Seychelles
     Sierra Leone
     Singapore
     Slovakia
     Slovenia
     Solomon Islands
     Somalia
     South Africa
     South Georgia and the South Sandwich Islands
     South Korea
     South Sudan
     Spain
     Spratly Islands
     Sri Lanka
     Sudan
     Suriname
     Svalbard and Jan Mayen Islands
     Swaziland
     Sweden
     Switzerland
     Syria
     Tajikistan
     Tanzania
     Thailand
     Timor-Leste
     Togo
     Tokelau
     Tonga
     Trinidad and Tobago
     Tunisia
     Turkey
     Turkmenistan
     Turks and Caicos islands
     Tuvalu
     Uganda
     Ukraine
     United Arab Emirates
     United Kingdom
     United States Minor Outlying Islands
     United States Virgin Islands
     United States of America
     Uruguay
     Uzbekistan
     Vanuatu
     Vatican City
     Venezuela
     Vietnam
     Wallis and Futuna
     Western Sahara
     Yemen
     Zambia
     Zimbabwe
    Confirming availability of PR data for: Madagascar...
    PR points are available for Madagascar.
    Attempting to download PR point data for Madagascar ...
    Data downloaded for Madagascar.
    Downloading list of available species, please wait...
    Confirming availability of Vector data for: Myanmar...
    Vector points are available for Myanmar.
    Attempting to download vector occurence data for Myanmar ...
    Data downloaded for Myanmar,
    Regions defined for each Polygons
    Regions defined for each Polygons
    Scale for 'fill' is already present. Adding another scale for 'fill', which
    will replace the existing scale.
    Quitting from lines 136-137 (overview.Rmd)
    Error: processing vignette 'overview.Rmd' failed with diagnostics:
    argument is of length zero
    --- failed re-building ‘overview.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘overview.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86