CRAN Package Check Results for Package sensiPhy

Last updated on 2020-04-07 01:52:59 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.8.5 21.45 210.23 231.68 OK
r-devel-linux-x86_64-debian-gcc 0.8.5 16.50 154.81 171.31 OK
r-devel-linux-x86_64-fedora-clang 0.8.5 267.48 OK
r-devel-linux-x86_64-fedora-gcc 0.8.5 271.42 OK
r-devel-windows-ix86+x86_64 0.8.5 51.00 261.00 312.00 OK
r-devel-windows-ix86+x86_64-gcc8 0.8.4 33.00 132.00 165.00 ERROR
r-patched-linux-x86_64 0.8.5 18.95 199.33 218.28 OK
r-patched-solaris-x86 0.8.5 355.60 OK
r-release-linux-x86_64 0.8.5 18.00 181.81 199.81 OK
r-release-windows-ix86+x86_64 0.8.4 35.00 286.00 321.00 OK
r-release-osx-x86_64 0.8.4 OK
r-oldrel-windows-ix86+x86_64 0.8.5 33.00 261.00 294.00 OK
r-oldrel-osx-x86_64 0.8.4 OK

Check Details

Version: 0.8.4
Check: examples
Result: ERROR
    Running examples in 'sensiPhy-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: clade_physig
    > ### Title: Influential clade detection - Phylogenetic signal
    > ### Aliases: clade_physig
    >
    > ### ** Examples
    >
    > data(alien)
    > alien.data<-alien$data
    > alien.phy<-alien$phy
    > # Logtransform data
    > alien.data$logMass <- log(alien.data$adultMass)
    > # Run sensitivity analysis:
    > clade <- clade_physig(trait.col = "logMass", data = alien.data, n.sim = 20,
    + phy = alien.phy[[1]], clade.col = "family", method = "K")
    Warning in match_dataphy(get(trait.col) ~ 1, data, phy) :
     NA's in response or predictor, rows with NA's were removed
    Warning in match_dataphy(get(trait.col) ~ 1, data, phy) :
     Some phylo tips do not match species in data (this can be due to NA removal) species were dropped from phylogeny or data
    Used dataset has 92 species that match data and phylogeny
    
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    > summary(clade)
    Error in data.frame(`clade removed` = c, N.species = ce$N.species, estimate = numeric(length(c)), :
     arguments imply differing number of rows: 0, 5
    Calls: summary -> summary.clade.physig -> data.frame
    Execution halted
Flavor: r-devel-windows-ix86+x86_64-gcc8