CRAN Package Check Results for Package vcfR

Last updated on 2020-06-06 02:07:17 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.10.0 156.11 212.05 368.16 ERROR
r-devel-linux-x86_64-debian-gcc 1.10.0 120.51 171.54 292.05 ERROR
r-devel-linux-x86_64-fedora-clang 1.11.0 398.36 NOTE
r-devel-linux-x86_64-fedora-gcc 1.11.0 353.86 OK
r-devel-windows-ix86+x86_64 1.10.0 381.00 461.00 842.00 ERROR
r-patched-linux-x86_64 1.10.0 117.08 217.18 334.26 ERROR
r-patched-solaris-x86 1.11.0 5.90 ERROR
r-release-linux-x86_64 1.10.0 118.75 213.40 332.15 ERROR
r-release-osx-x86_64 1.10.0 NOTE
r-release-windows-ix86+x86_64 1.10.0 386.00 449.00 835.00 ERROR
r-oldrel-osx-x86_64 1.10.0 NOTE
r-oldrel-windows-ix86+x86_64 1.10.0 382.00 326.00 708.00 ERROR

Check Details

Version: 1.10.0
Check: examples
Result: ERROR
    Running examples in 'vcfR-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: Convert to tidy data frames
    > ### Title: Convert vcfR objects to tidy data frames
    > ### Aliases: 'Convert to tidy data frames' vcfR2tidy extract_info_tidy
    > ### extract_gt_tidy vcf_field_names
    >
    > ### ** Examples
    >
    > # load the data
    > data("vcfR_test")
    > vcf <- vcfR_test
    >
    >
    > # extract all the INFO and FORMAT fields into a list of tidy
    > # data frames: fix, gt, and meta. Here we don't coerce columns
    > # to integer or numeric types...
    > Z <- vcfR2tidy(vcf)
    Error: Can't combine `..1$tt` <logical> and `..2$tt` <character>.
    Backtrace:
     x
     1. +-vcfR::vcfR2tidy(vcf)
     2. | +-base::do.call(what = extract_gt_tidy, args = format_dots)
     3. | \-(function (x, format_fields = NULL, format_types = TRUE, dot_is_NA = TRUE, ...
     4. | \-vcfR:::guess_types(format_df %>% dplyr::filter(ID %in% format_fields))
     5. | \-`%>%`(...)
     6. | +-base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
     7. | \-base::eval(quote(`_fseq`(`_lhs`)), env, env)
     8. | \-base::eval(quote(`_fseq`(`_lhs`)), env, env)
     9. | \-vcfR:::`_fseq`(`_lhs`)
     10. | \-magrittr::freduce(value, `_function_list`)
     11. | +-base::withVisible(function_list[[k]](value))
     12. | \-function_list[[k]](value)
     13. | \-dplyr::bind_rows(., tmp)
     14. | \-vctrs::vec_rbind(!!!dots, .names_to = .id)
     15. \-vctrs::vec_default_ptype2(...)
     16. \-vctrs::stop_incompatible_type(...)
     17.
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.10.0
Check: tests
Result: ERROR
     Running 'testthat.R' [63s/67s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     >
     > library("testthat")
     > #library("vcfR")
     > #
     > #
     > test_check("vcfR")
     Loading required package: vcfR
    
     ***** *** vcfR *** *****
     This is vcfR 1.10.0
     browseVignettes('vcfR') # Documentation
     citation('vcfR') # Citation
     ***** ***** ***** *****
    
     -- 1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55) -------
     Can't combine `..1$tt` <logical> and `..2$tt` <character>.
     Backtrace:
     1. base::suppressMessages(Z <- extract_gt_tidy(vcf, format_fields = c("GT")))
     15. vctrs::vec_default_ptype2(...)
     16. vctrs::stop_incompatible_type(...)
     17. vctrs:::stop_incompatible(...)
     18. vctrs:::stop_vctrs(...)
    
     -- 2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70) -----
     Can't combine `..1$tt` <logical> and `..2$tt` <character>.
     Backtrace:
     1. base::suppressMessages(Z <- extract_gt_tidy(vcf))
     15. vctrs::vec_default_ptype2(...)
     16. vctrs::stop_incompatible_type(...)
     17. vctrs:::stop_incompatible(...)
     18. vctrs:::stop_vctrs(...)
    
     -- 3. Error: vcfR2tidy works (@test_vcfRtidy.R#81) ----------------------------
     Can't combine `..1$tt` <logical> and `..2$tt` <character>.
     Backtrace:
     1. vcfR::vcfR2tidy(vcfR_test, info_only = FALSE)
     15. vctrs::vec_default_ptype2(...)
     16. vctrs::stop_incompatible_type(...)
     17. vctrs:::stop_incompatible(...)
     18. vctrs:::stop_vctrs(...)
    
     == testthat results ===========================================================
     [ OK: 475 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ]
     1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55)
     2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70)
     3. Error: vcfR2tidy works (@test_vcfRtidy.R#81)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.10.0
Check: examples
Result: ERROR
    Running examples in ‘vcfR-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: Convert to tidy data frames
    > ### Title: Convert vcfR objects to tidy data frames
    > ### Aliases: 'Convert to tidy data frames' vcfR2tidy extract_info_tidy
    > ### extract_gt_tidy vcf_field_names
    >
    > ### ** Examples
    >
    > # load the data
    > data("vcfR_test")
    > vcf <- vcfR_test
    >
    >
    > # extract all the INFO and FORMAT fields into a list of tidy
    > # data frames: fix, gt, and meta. Here we don't coerce columns
    > # to integer or numeric types...
    > Z <- vcfR2tidy(vcf)
    Error: Can't combine `..1$tt` <logical> and `..2$tt` <character>.
    Backtrace:
     █
     1. ├─vcfR::vcfR2tidy(vcf)
     2. │ ├─base::do.call(what = extract_gt_tidy, args = format_dots)
     3. │ └─(function (x, format_fields = NULL, format_types = TRUE, dot_is_NA = TRUE, ...
     4. │ └─vcfR:::guess_types(format_df %>% dplyr::filter(ID %in% format_fields))
     5. │ └─`%>%`(...)
     6. │ ├─base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
     7. │ └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
     8. │ └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
     9. │ └─vcfR:::`_fseq`(`_lhs`)
     10. │ └─magrittr::freduce(value, `_function_list`)
     11. │ ├─base::withVisible(function_list[[k]](value))
     12. │ └─function_list[[k]](value)
     13. │ └─dplyr::bind_rows(., tmp)
     14. │ └─vctrs::vec_rbind(!!!dots, .names_to = .id)
     15.
    Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.10.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [55s/78s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     >
     > library("testthat")
     > #library("vcfR")
     > #
     > #
     > test_check("vcfR")
     Loading required package: vcfR
    
     ***** *** vcfR *** *****
     This is vcfR 1.10.0
     browseVignettes('vcfR') # Documentation
     citation('vcfR') # Citation
     ***** ***** ***** *****
    
     ── 1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55) ───────
     Can't combine `..1$tt` <logical> and `..2$tt` <character>.
     Backtrace:
     1. base::suppressMessages(Z <- extract_gt_tidy(vcf, format_fields = c("GT")))
     15. vctrs::vec_default_ptype2(...)
     16. vctrs::stop_incompatible_type(...)
     17. vctrs:::stop_incompatible(...)
     18. vctrs:::stop_vctrs(...)
    
     ── 2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70) ─────
     Can't combine `..1$tt` <logical> and `..2$tt` <character>.
     Backtrace:
     1. base::suppressMessages(Z <- extract_gt_tidy(vcf))
     15. vctrs::vec_default_ptype2(...)
     16. vctrs::stop_incompatible_type(...)
     17. vctrs:::stop_incompatible(...)
     18. vctrs:::stop_vctrs(...)
    
     ── 3. Error: vcfR2tidy works (@test_vcfRtidy.R#81) ────────────────────────────
     Can't combine `..1$tt` <logical> and `..2$tt` <character>.
     Backtrace:
     1. vcfR::vcfR2tidy(vcfR_test, info_only = FALSE)
     15. vctrs::vec_default_ptype2(...)
     16. vctrs::stop_incompatible_type(...)
     17. vctrs:::stop_incompatible(...)
     18. vctrs:::stop_vctrs(...)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 475 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ]
     1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55)
     2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70)
     3. Error: vcfR2tidy works (@test_vcfRtidy.R#81)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.11.0
Check: installed package size
Result: NOTE
     installed size is 9.2Mb
     sub-directories of 1Mb or more:
     libs 7.2Mb
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.10.0
Check: running examples for arch ‘i386’
Result: ERROR
    Running examples in 'vcfR-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: Convert to tidy data frames
    > ### Title: Convert vcfR objects to tidy data frames
    > ### Aliases: 'Convert to tidy data frames' vcfR2tidy extract_info_tidy
    > ### extract_gt_tidy vcf_field_names
    >
    > ### ** Examples
    >
    > # load the data
    > data("vcfR_test")
    > vcf <- vcfR_test
    >
    >
    > # extract all the INFO and FORMAT fields into a list of tidy
    > # data frames: fix, gt, and meta. Here we don't coerce columns
    > # to integer or numeric types...
    > Z <- vcfR2tidy(vcf)
    Error: Can't combine `..1$tt` <logical> and `..2$tt` <character>.
    Backtrace:
     x
     1. +-vcfR::vcfR2tidy(vcf)
     2. | +-base::do.call(what = extract_gt_tidy, args = format_dots)
     3. | \-(function (x, format_fields = NULL, format_types = TRUE, dot_is_NA = TRUE, ...
     4. | \-vcfR:::guess_types(format_df %>% dplyr::filter(ID %in% format_fields))
     5. | \-`%>%`(...)
     6. | +-base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
     7. | \-base::eval(quote(`_fseq`(`_lhs`)), env, env)
     8. | \-base::eval(quote(`_fseq`(`_lhs`)), env, env)
     9. | \-vcfR:::`_fseq`(`_lhs`)
     10. | \-magrittr::freduce(value, `_function_list`)
     11. | +-base::withVisible(function_list[[k]](value))
     12. | \-function_list[[k]](value)
     13. | \-dplyr::bind_rows(., tmp)
     14. | \-vctrs::vec_rbind(!!!dots, .names_to = .id)
     15. \-vctrs::vec_default_ptype2(...)
     16. \-vctrs::stop_incompatible_type(...)
     17.
    Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.10.0
Check: running examples for arch ‘x64’
Result: ERROR
    Running examples in 'vcfR-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: Convert to tidy data frames
    > ### Title: Convert vcfR objects to tidy data frames
    > ### Aliases: 'Convert to tidy data frames' vcfR2tidy extract_info_tidy
    > ### extract_gt_tidy vcf_field_names
    >
    > ### ** Examples
    >
    > # load the data
    > data("vcfR_test")
    > vcf <- vcfR_test
    >
    >
    > # extract all the INFO and FORMAT fields into a list of tidy
    > # data frames: fix, gt, and meta. Here we don't coerce columns
    > # to integer or numeric types...
    > Z <- vcfR2tidy(vcf)
    Error: Can't combine `..1$tt` <logical> and `..2$tt` <character>.
    Backtrace:
     x
     1. +-vcfR::vcfR2tidy(vcf)
     2. | +-base::do.call(what = extract_gt_tidy, args = format_dots)
     3. | \-(function (x, format_fields = NULL, format_types = TRUE, dot_is_NA = TRUE, ...
     4. | \-vcfR:::guess_types(format_df %>% dplyr::filter(ID %in% format_fields))
     5. | \-`%>%`(...)
     6. | +-base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
     7. | \-base::eval(quote(`_fseq`(`_lhs`)), env, env)
     8. | \-base::eval(quote(`_fseq`(`_lhs`)), env, env)
     9. | \-vcfR:::`_fseq`(`_lhs`)
     10. | \-magrittr::freduce(value, `_function_list`)
     11. | +-base::withVisible(function_list[[k]](value))
     12. | \-function_list[[k]](value)
     13. | \-dplyr::bind_rows(., tmp)
     14. | \-vctrs::vec_rbind(!!!dots, .names_to = .id)
     15. \-vctrs::vec_default_ptype2(...)
     16. \-vctrs::stop_incompatible_type(...)
     17.
    Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.10.0
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'testthat.R' [84s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     >
     > library("testthat")
     > #library("vcfR")
     > #
     > #
     > test_check("vcfR")
     Loading required package: vcfR
    
     ***** *** vcfR *** *****
     This is vcfR 1.10.0
     browseVignettes('vcfR') # Documentation
     citation('vcfR') # Citation
     ***** ***** ***** *****
    
     -- 1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55) -------
     Can't combine `..1$tt` <logical> and `..2$tt` <character>.
     Backtrace:
     1. base::suppressMessages(Z <- extract_gt_tidy(vcf, format_fields = c("GT")))
     15. vctrs::vec_default_ptype2(...)
     16. vctrs::stop_incompatible_type(...)
     17. vctrs:::stop_incompatible(...)
     18. vctrs:::stop_vctrs(...)
    
     -- 2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70) -----
     Can't combine `..1$tt` <logical> and `..2$tt` <character>.
     Backtrace:
     1. base::suppressMessages(Z <- extract_gt_tidy(vcf))
     15. vctrs::vec_default_ptype2(...)
     16. vctrs::stop_incompatible_type(...)
     17. vctrs:::stop_incompatible(...)
     18. vctrs:::stop_vctrs(...)
    
     -- 3. Error: vcfR2tidy works (@test_vcfRtidy.R#81) ----------------------------
     Can't combine `..1$tt` <logical> and `..2$tt` <character>.
     Backtrace:
     1. vcfR::vcfR2tidy(vcfR_test, info_only = FALSE)
     15. vctrs::vec_default_ptype2(...)
     16. vctrs::stop_incompatible_type(...)
     17. vctrs:::stop_incompatible(...)
     18. vctrs:::stop_vctrs(...)
    
     == testthat results ===========================================================
     [ OK: 475 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ]
     1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55)
     2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70)
     3. Error: vcfR2tidy works (@test_vcfRtidy.R#81)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.10.0
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'testthat.R' [87s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     >
     > library("testthat")
     > #library("vcfR")
     > #
     > #
     > test_check("vcfR")
     Loading required package: vcfR
    
     ***** *** vcfR *** *****
     This is vcfR 1.10.0
     browseVignettes('vcfR') # Documentation
     citation('vcfR') # Citation
     ***** ***** ***** *****
    
     -- 1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55) -------
     Can't combine `..1$tt` <logical> and `..2$tt` <character>.
     Backtrace:
     1. base::suppressMessages(Z <- extract_gt_tidy(vcf, format_fields = c("GT")))
     15. vctrs::vec_default_ptype2(...)
     16. vctrs::stop_incompatible_type(...)
     17. vctrs:::stop_incompatible(...)
     18. vctrs:::stop_vctrs(...)
    
     -- 2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70) -----
     Can't combine `..1$tt` <logical> and `..2$tt` <character>.
     Backtrace:
     1. base::suppressMessages(Z <- extract_gt_tidy(vcf))
     15. vctrs::vec_default_ptype2(...)
     16. vctrs::stop_incompatible_type(...)
     17. vctrs:::stop_incompatible(...)
     18. vctrs:::stop_vctrs(...)
    
     -- 3. Error: vcfR2tidy works (@test_vcfRtidy.R#81) ----------------------------
     Can't combine `..1$tt` <logical> and `..2$tt` <character>.
     Backtrace:
     1. vcfR::vcfR2tidy(vcfR_test, info_only = FALSE)
     15. vctrs::vec_default_ptype2(...)
     16. vctrs::stop_incompatible_type(...)
     17. vctrs:::stop_incompatible(...)
     18. vctrs:::stop_vctrs(...)
    
     == testthat results ===========================================================
     [ OK: 475 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ]
     1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55)
     2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70)
     3. Error: vcfR2tidy works (@test_vcfRtidy.R#81)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.10.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [67s/72s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     >
     > library("testthat")
     > #library("vcfR")
     > #
     > #
     > test_check("vcfR")
     Loading required package: vcfR
    
     ***** *** vcfR *** *****
     This is vcfR 1.10.0
     browseVignettes('vcfR') # Documentation
     citation('vcfR') # Citation
     ***** ***** ***** *****
    
     ── 1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55) ───────
     Can't combine `..1$tt` <logical> and `..2$tt` <character>.
     Backtrace:
     1. base::suppressMessages(Z <- extract_gt_tidy(vcf, format_fields = c("GT")))
     15. vctrs::vec_default_ptype2(...)
     16. vctrs::stop_incompatible_type(...)
     17. vctrs:::stop_incompatible(...)
     18. vctrs:::stop_vctrs(...)
    
     ── 2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70) ─────
     Can't combine `..1$tt` <logical> and `..2$tt` <character>.
     Backtrace:
     1. base::suppressMessages(Z <- extract_gt_tidy(vcf))
     15. vctrs::vec_default_ptype2(...)
     16. vctrs::stop_incompatible_type(...)
     17. vctrs:::stop_incompatible(...)
     18. vctrs:::stop_vctrs(...)
    
     ── 3. Error: vcfR2tidy works (@test_vcfRtidy.R#81) ────────────────────────────
     Can't combine `..1$tt` <logical> and `..2$tt` <character>.
     Backtrace:
     1. vcfR::vcfR2tidy(vcfR_test, info_only = FALSE)
     15. vctrs::vec_default_ptype2(...)
     16. vctrs::stop_incompatible_type(...)
     17. vctrs:::stop_incompatible(...)
     18. vctrs:::stop_vctrs(...)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 475 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ]
     1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55)
     2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70)
     3. Error: vcfR2tidy works (@test_vcfRtidy.R#81)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 1.11.0
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-patched-solaris-x86

Version: 1.10.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [64s/69s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     >
     > library("testthat")
     > #library("vcfR")
     > #
     > #
     > test_check("vcfR")
     Loading required package: vcfR
    
     ***** *** vcfR *** *****
     This is vcfR 1.10.0
     browseVignettes('vcfR') # Documentation
     citation('vcfR') # Citation
     ***** ***** ***** *****
    
     ── 1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55) ───────
     Can't combine `..1$tt` <logical> and `..2$tt` <character>.
     Backtrace:
     1. base::suppressMessages(Z <- extract_gt_tidy(vcf, format_fields = c("GT")))
     15. vctrs::vec_default_ptype2(...)
     16. vctrs::stop_incompatible_type(...)
     17. vctrs:::stop_incompatible(...)
     18. vctrs:::stop_vctrs(...)
    
     ── 2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70) ─────
     Can't combine `..1$tt` <logical> and `..2$tt` <character>.
     Backtrace:
     1. base::suppressMessages(Z <- extract_gt_tidy(vcf))
     15. vctrs::vec_default_ptype2(...)
     16. vctrs::stop_incompatible_type(...)
     17. vctrs:::stop_incompatible(...)
     18. vctrs:::stop_vctrs(...)
    
     ── 3. Error: vcfR2tidy works (@test_vcfRtidy.R#81) ────────────────────────────
     Can't combine `..1$tt` <logical> and `..2$tt` <character>.
     Backtrace:
     1. vcfR::vcfR2tidy(vcfR_test, info_only = FALSE)
     15. vctrs::vec_default_ptype2(...)
     16. vctrs::stop_incompatible_type(...)
     17. vctrs:::stop_incompatible(...)
     18. vctrs:::stop_vctrs(...)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 475 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ]
     1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55)
     2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70)
     3. Error: vcfR2tidy works (@test_vcfRtidy.R#81)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-linux-x86_64

Version: 1.10.0
Check: installed package size
Result: NOTE
     installed size is 6.3Mb
     sub-directories of 1Mb or more:
     libs 4.4Mb
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.10.0
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'testthat.R' [79s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     >
     > library("testthat")
     > #library("vcfR")
     > #
     > #
     > test_check("vcfR")
     Loading required package: vcfR
    
     ***** *** vcfR *** *****
     This is vcfR 1.10.0
     browseVignettes('vcfR') # Documentation
     citation('vcfR') # Citation
     ***** ***** ***** *****
    
     -- 1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55) -------
     Can't combine `..1$tt` <logical> and `..2$tt` <character>.
     Backtrace:
     1. base::suppressMessages(Z <- extract_gt_tidy(vcf, format_fields = c("GT")))
     15. vctrs::vec_default_ptype2(...)
     16. vctrs::stop_incompatible_type(...)
     17. vctrs:::stop_incompatible(...)
     18. vctrs:::stop_vctrs(...)
    
     -- 2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70) -----
     Can't combine `..1$tt` <logical> and `..2$tt` <character>.
     Backtrace:
     1. base::suppressMessages(Z <- extract_gt_tidy(vcf))
     15. vctrs::vec_default_ptype2(...)
     16. vctrs::stop_incompatible_type(...)
     17. vctrs:::stop_incompatible(...)
     18. vctrs:::stop_vctrs(...)
    
     -- 3. Error: vcfR2tidy works (@test_vcfRtidy.R#81) ----------------------------
     Can't combine `..1$tt` <logical> and `..2$tt` <character>.
     Backtrace:
     1. vcfR::vcfR2tidy(vcfR_test, info_only = FALSE)
     15. vctrs::vec_default_ptype2(...)
     16. vctrs::stop_incompatible_type(...)
     17. vctrs:::stop_incompatible(...)
     18. vctrs:::stop_vctrs(...)
    
     == testthat results ===========================================================
     [ OK: 475 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ]
     1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55)
     2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70)
     3. Error: vcfR2tidy works (@test_vcfRtidy.R#81)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 1.10.0
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'testthat.R' [86s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     >
     > library("testthat")
     > #library("vcfR")
     > #
     > #
     > test_check("vcfR")
     Loading required package: vcfR
    
     ***** *** vcfR *** *****
     This is vcfR 1.10.0
     browseVignettes('vcfR') # Documentation
     citation('vcfR') # Citation
     ***** ***** ***** *****
    
     -- 1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55) -------
     Can't combine `..1$tt` <logical> and `..2$tt` <character>.
     Backtrace:
     1. base::suppressMessages(Z <- extract_gt_tidy(vcf, format_fields = c("GT")))
     15. vctrs::vec_default_ptype2(...)
     16. vctrs::stop_incompatible_type(...)
     17. vctrs:::stop_incompatible(...)
     18. vctrs:::stop_vctrs(...)
    
     -- 2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70) -----
     Can't combine `..1$tt` <logical> and `..2$tt` <character>.
     Backtrace:
     1. base::suppressMessages(Z <- extract_gt_tidy(vcf))
     15. vctrs::vec_default_ptype2(...)
     16. vctrs::stop_incompatible_type(...)
     17. vctrs:::stop_incompatible(...)
     18. vctrs:::stop_vctrs(...)
    
     -- 3. Error: vcfR2tidy works (@test_vcfRtidy.R#81) ----------------------------
     Can't combine `..1$tt` <logical> and `..2$tt` <character>.
     Backtrace:
     1. vcfR::vcfR2tidy(vcfR_test, info_only = FALSE)
     15. vctrs::vec_default_ptype2(...)
     16. vctrs::stop_incompatible_type(...)
     17. vctrs:::stop_incompatible(...)
     18. vctrs:::stop_vctrs(...)
    
     == testthat results ===========================================================
     [ OK: 475 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ]
     1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55)
     2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70)
     3. Error: vcfR2tidy works (@test_vcfRtidy.R#81)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 1.10.0
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'testthat.R' [57s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     >
     > library("testthat")
     > #library("vcfR")
     > #
     > #
     > test_check("vcfR")
     Loading required package: vcfR
    
     ***** *** vcfR *** *****
     This is vcfR 1.10.0
     browseVignettes('vcfR') # Documentation
     citation('vcfR') # Citation
     ***** ***** ***** *****
    
     -- 1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55) -------
     Can't combine `..1$tt` <logical> and `..2$tt` <character>.
     Backtrace:
     1. base::suppressMessages(Z <- extract_gt_tidy(vcf, format_fields = c("GT")))
     15. vctrs::vec_default_ptype2(...)
     16. vctrs::stop_incompatible_type(...)
     17. vctrs:::stop_incompatible(...)
     18. vctrs:::stop_vctrs(...)
    
     -- 2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70) -----
     Can't combine `..1$tt` <logical> and `..2$tt` <character>.
     Backtrace:
     1. base::suppressMessages(Z <- extract_gt_tidy(vcf))
     15. vctrs::vec_default_ptype2(...)
     16. vctrs::stop_incompatible_type(...)
     17. vctrs:::stop_incompatible(...)
     18. vctrs:::stop_vctrs(...)
    
     -- 3. Error: vcfR2tidy works (@test_vcfRtidy.R#81) ----------------------------
     Can't combine `..1$tt` <logical> and `..2$tt` <character>.
     Backtrace:
     1. vcfR::vcfR2tidy(vcfR_test, info_only = FALSE)
     15. vctrs::vec_default_ptype2(...)
     16. vctrs::stop_incompatible_type(...)
     17. vctrs:::stop_incompatible(...)
     18. vctrs:::stop_vctrs(...)
    
     == testthat results ===========================================================
     [ OK: 475 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ]
     1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55)
     2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70)
     3. Error: vcfR2tidy works (@test_vcfRtidy.R#81)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 1.10.0
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'testthat.R' [61s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     >
     > library("testthat")
     > #library("vcfR")
     > #
     > #
     > test_check("vcfR")
     Loading required package: vcfR
    
     ***** *** vcfR *** *****
     This is vcfR 1.10.0
     browseVignettes('vcfR') # Documentation
     citation('vcfR') # Citation
     ***** ***** ***** *****
    
     -- 1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55) -------
     Can't combine `..1$tt` <logical> and `..2$tt` <character>.
     Backtrace:
     1. base::suppressMessages(Z <- extract_gt_tidy(vcf, format_fields = c("GT")))
     15. vctrs::vec_default_ptype2(...)
     16. vctrs::stop_incompatible_type(...)
     17. vctrs:::stop_incompatible(...)
     18. vctrs:::stop_vctrs(...)
    
     -- 2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70) -----
     Can't combine `..1$tt` <logical> and `..2$tt` <character>.
     Backtrace:
     1. base::suppressMessages(Z <- extract_gt_tidy(vcf))
     15. vctrs::vec_default_ptype2(...)
     16. vctrs::stop_incompatible_type(...)
     17. vctrs:::stop_incompatible(...)
     18. vctrs:::stop_vctrs(...)
    
     -- 3. Error: vcfR2tidy works (@test_vcfRtidy.R#81) ----------------------------
     Can't combine `..1$tt` <logical> and `..2$tt` <character>.
     Backtrace:
     1. vcfR::vcfR2tidy(vcfR_test, info_only = FALSE)
     15. vctrs::vec_default_ptype2(...)
     16. vctrs::stop_incompatible_type(...)
     17. vctrs:::stop_incompatible(...)
     18. vctrs:::stop_vctrs(...)
    
     == testthat results ===========================================================
     [ OK: 475 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ]
     1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55)
     2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70)
     3. Error: vcfR2tidy works (@test_vcfRtidy.R#81)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64