Last updated on 2020-06-06 02:07:17 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.10.0 | 156.11 | 212.05 | 368.16 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.10.0 | 120.51 | 171.54 | 292.05 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.11.0 | 398.36 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.11.0 | 353.86 | OK | |||
| r-devel-windows-ix86+x86_64 | 1.10.0 | 381.00 | 461.00 | 842.00 | ERROR | |
| r-patched-linux-x86_64 | 1.10.0 | 117.08 | 217.18 | 334.26 | ERROR | |
| r-patched-solaris-x86 | 1.11.0 | 5.90 | ERROR | |||
| r-release-linux-x86_64 | 1.10.0 | 118.75 | 213.40 | 332.15 | ERROR | |
| r-release-osx-x86_64 | 1.10.0 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 1.10.0 | 386.00 | 449.00 | 835.00 | ERROR | |
| r-oldrel-osx-x86_64 | 1.10.0 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.10.0 | 382.00 | 326.00 | 708.00 | ERROR |
Version: 1.10.0
Check: examples
Result: ERROR
Running examples in 'vcfR-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Convert to tidy data frames
> ### Title: Convert vcfR objects to tidy data frames
> ### Aliases: 'Convert to tidy data frames' vcfR2tidy extract_info_tidy
> ### extract_gt_tidy vcf_field_names
>
> ### ** Examples
>
> # load the data
> data("vcfR_test")
> vcf <- vcfR_test
>
>
> # extract all the INFO and FORMAT fields into a list of tidy
> # data frames: fix, gt, and meta. Here we don't coerce columns
> # to integer or numeric types...
> Z <- vcfR2tidy(vcf)
Error: Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
x
1. +-vcfR::vcfR2tidy(vcf)
2. | +-base::do.call(what = extract_gt_tidy, args = format_dots)
3. | \-(function (x, format_fields = NULL, format_types = TRUE, dot_is_NA = TRUE, ...
4. | \-vcfR:::guess_types(format_df %>% dplyr::filter(ID %in% format_fields))
5. | \-`%>%`(...)
6. | +-base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
7. | \-base::eval(quote(`_fseq`(`_lhs`)), env, env)
8. | \-base::eval(quote(`_fseq`(`_lhs`)), env, env)
9. | \-vcfR:::`_fseq`(`_lhs`)
10. | \-magrittr::freduce(value, `_function_list`)
11. | +-base::withVisible(function_list[[k]](value))
12. | \-function_list[[k]](value)
13. | \-dplyr::bind_rows(., tmp)
14. | \-vctrs::vec_rbind(!!!dots, .names_to = .id)
15. \-vctrs::vec_default_ptype2(...)
16. \-vctrs::stop_incompatible_type(...)
17.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [63s/67s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
>
> library("testthat")
> #library("vcfR")
> #
> #
> test_check("vcfR")
Loading required package: vcfR
***** *** vcfR *** *****
This is vcfR 1.10.0
browseVignettes('vcfR') # Documentation
citation('vcfR') # Citation
***** ***** ***** *****
-- 1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55) -------
Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
1. base::suppressMessages(Z <- extract_gt_tidy(vcf, format_fields = c("GT")))
15. vctrs::vec_default_ptype2(...)
16. vctrs::stop_incompatible_type(...)
17. vctrs:::stop_incompatible(...)
18. vctrs:::stop_vctrs(...)
-- 2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70) -----
Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
1. base::suppressMessages(Z <- extract_gt_tidy(vcf))
15. vctrs::vec_default_ptype2(...)
16. vctrs::stop_incompatible_type(...)
17. vctrs:::stop_incompatible(...)
18. vctrs:::stop_vctrs(...)
-- 3. Error: vcfR2tidy works (@test_vcfRtidy.R#81) ----------------------------
Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
1. vcfR::vcfR2tidy(vcfR_test, info_only = FALSE)
15. vctrs::vec_default_ptype2(...)
16. vctrs::stop_incompatible_type(...)
17. vctrs:::stop_incompatible(...)
18. vctrs:::stop_vctrs(...)
== testthat results ===========================================================
[ OK: 475 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ]
1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55)
2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70)
3. Error: vcfR2tidy works (@test_vcfRtidy.R#81)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.10.0
Check: examples
Result: ERROR
Running examples in ‘vcfR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Convert to tidy data frames
> ### Title: Convert vcfR objects to tidy data frames
> ### Aliases: 'Convert to tidy data frames' vcfR2tidy extract_info_tidy
> ### extract_gt_tidy vcf_field_names
>
> ### ** Examples
>
> # load the data
> data("vcfR_test")
> vcf <- vcfR_test
>
>
> # extract all the INFO and FORMAT fields into a list of tidy
> # data frames: fix, gt, and meta. Here we don't coerce columns
> # to integer or numeric types...
> Z <- vcfR2tidy(vcf)
Error: Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
█
1. ├─vcfR::vcfR2tidy(vcf)
2. │ ├─base::do.call(what = extract_gt_tidy, args = format_dots)
3. │ └─(function (x, format_fields = NULL, format_types = TRUE, dot_is_NA = TRUE, ...
4. │ └─vcfR:::guess_types(format_df %>% dplyr::filter(ID %in% format_fields))
5. │ └─`%>%`(...)
6. │ ├─base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
7. │ └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
8. │ └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
9. │ └─vcfR:::`_fseq`(`_lhs`)
10. │ └─magrittr::freduce(value, `_function_list`)
11. │ ├─base::withVisible(function_list[[k]](value))
12. │ └─function_list[[k]](value)
13. │ └─dplyr::bind_rows(., tmp)
14. │ └─vctrs::vec_rbind(!!!dots, .names_to = .id)
15.
Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [55s/78s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
>
> library("testthat")
> #library("vcfR")
> #
> #
> test_check("vcfR")
Loading required package: vcfR
***** *** vcfR *** *****
This is vcfR 1.10.0
browseVignettes('vcfR') # Documentation
citation('vcfR') # Citation
***** ***** ***** *****
── 1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55) ───────
Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
1. base::suppressMessages(Z <- extract_gt_tidy(vcf, format_fields = c("GT")))
15. vctrs::vec_default_ptype2(...)
16. vctrs::stop_incompatible_type(...)
17. vctrs:::stop_incompatible(...)
18. vctrs:::stop_vctrs(...)
── 2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70) ─────
Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
1. base::suppressMessages(Z <- extract_gt_tidy(vcf))
15. vctrs::vec_default_ptype2(...)
16. vctrs::stop_incompatible_type(...)
17. vctrs:::stop_incompatible(...)
18. vctrs:::stop_vctrs(...)
── 3. Error: vcfR2tidy works (@test_vcfRtidy.R#81) ────────────────────────────
Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
1. vcfR::vcfR2tidy(vcfR_test, info_only = FALSE)
15. vctrs::vec_default_ptype2(...)
16. vctrs::stop_incompatible_type(...)
17. vctrs:::stop_incompatible(...)
18. vctrs:::stop_vctrs(...)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 475 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ]
1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55)
2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70)
3. Error: vcfR2tidy works (@test_vcfRtidy.R#81)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.11.0
Check: installed package size
Result: NOTE
installed size is 9.2Mb
sub-directories of 1Mb or more:
libs 7.2Mb
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.10.0
Check: running examples for arch ‘i386’
Result: ERROR
Running examples in 'vcfR-Ex.R' failed
The error most likely occurred in:
> ### Name: Convert to tidy data frames
> ### Title: Convert vcfR objects to tidy data frames
> ### Aliases: 'Convert to tidy data frames' vcfR2tidy extract_info_tidy
> ### extract_gt_tidy vcf_field_names
>
> ### ** Examples
>
> # load the data
> data("vcfR_test")
> vcf <- vcfR_test
>
>
> # extract all the INFO and FORMAT fields into a list of tidy
> # data frames: fix, gt, and meta. Here we don't coerce columns
> # to integer or numeric types...
> Z <- vcfR2tidy(vcf)
Error: Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
x
1. +-vcfR::vcfR2tidy(vcf)
2. | +-base::do.call(what = extract_gt_tidy, args = format_dots)
3. | \-(function (x, format_fields = NULL, format_types = TRUE, dot_is_NA = TRUE, ...
4. | \-vcfR:::guess_types(format_df %>% dplyr::filter(ID %in% format_fields))
5. | \-`%>%`(...)
6. | +-base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
7. | \-base::eval(quote(`_fseq`(`_lhs`)), env, env)
8. | \-base::eval(quote(`_fseq`(`_lhs`)), env, env)
9. | \-vcfR:::`_fseq`(`_lhs`)
10. | \-magrittr::freduce(value, `_function_list`)
11. | +-base::withVisible(function_list[[k]](value))
12. | \-function_list[[k]](value)
13. | \-dplyr::bind_rows(., tmp)
14. | \-vctrs::vec_rbind(!!!dots, .names_to = .id)
15. \-vctrs::vec_default_ptype2(...)
16. \-vctrs::stop_incompatible_type(...)
17.
Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.10.0
Check: running examples for arch ‘x64’
Result: ERROR
Running examples in 'vcfR-Ex.R' failed
The error most likely occurred in:
> ### Name: Convert to tidy data frames
> ### Title: Convert vcfR objects to tidy data frames
> ### Aliases: 'Convert to tidy data frames' vcfR2tidy extract_info_tidy
> ### extract_gt_tidy vcf_field_names
>
> ### ** Examples
>
> # load the data
> data("vcfR_test")
> vcf <- vcfR_test
>
>
> # extract all the INFO and FORMAT fields into a list of tidy
> # data frames: fix, gt, and meta. Here we don't coerce columns
> # to integer or numeric types...
> Z <- vcfR2tidy(vcf)
Error: Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
x
1. +-vcfR::vcfR2tidy(vcf)
2. | +-base::do.call(what = extract_gt_tidy, args = format_dots)
3. | \-(function (x, format_fields = NULL, format_types = TRUE, dot_is_NA = TRUE, ...
4. | \-vcfR:::guess_types(format_df %>% dplyr::filter(ID %in% format_fields))
5. | \-`%>%`(...)
6. | +-base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
7. | \-base::eval(quote(`_fseq`(`_lhs`)), env, env)
8. | \-base::eval(quote(`_fseq`(`_lhs`)), env, env)
9. | \-vcfR:::`_fseq`(`_lhs`)
10. | \-magrittr::freduce(value, `_function_list`)
11. | +-base::withVisible(function_list[[k]](value))
12. | \-function_list[[k]](value)
13. | \-dplyr::bind_rows(., tmp)
14. | \-vctrs::vec_rbind(!!!dots, .names_to = .id)
15. \-vctrs::vec_default_ptype2(...)
16. \-vctrs::stop_incompatible_type(...)
17.
Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.10.0
Check: running tests for arch ‘i386’
Result: ERROR
Running 'testthat.R' [84s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
>
> library("testthat")
> #library("vcfR")
> #
> #
> test_check("vcfR")
Loading required package: vcfR
***** *** vcfR *** *****
This is vcfR 1.10.0
browseVignettes('vcfR') # Documentation
citation('vcfR') # Citation
***** ***** ***** *****
-- 1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55) -------
Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
1. base::suppressMessages(Z <- extract_gt_tidy(vcf, format_fields = c("GT")))
15. vctrs::vec_default_ptype2(...)
16. vctrs::stop_incompatible_type(...)
17. vctrs:::stop_incompatible(...)
18. vctrs:::stop_vctrs(...)
-- 2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70) -----
Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
1. base::suppressMessages(Z <- extract_gt_tidy(vcf))
15. vctrs::vec_default_ptype2(...)
16. vctrs::stop_incompatible_type(...)
17. vctrs:::stop_incompatible(...)
18. vctrs:::stop_vctrs(...)
-- 3. Error: vcfR2tidy works (@test_vcfRtidy.R#81) ----------------------------
Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
1. vcfR::vcfR2tidy(vcfR_test, info_only = FALSE)
15. vctrs::vec_default_ptype2(...)
16. vctrs::stop_incompatible_type(...)
17. vctrs:::stop_incompatible(...)
18. vctrs:::stop_vctrs(...)
== testthat results ===========================================================
[ OK: 475 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ]
1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55)
2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70)
3. Error: vcfR2tidy works (@test_vcfRtidy.R#81)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-windows-ix86+x86_64
Version: 1.10.0
Check: running tests for arch ‘x64’
Result: ERROR
Running 'testthat.R' [87s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
>
> library("testthat")
> #library("vcfR")
> #
> #
> test_check("vcfR")
Loading required package: vcfR
***** *** vcfR *** *****
This is vcfR 1.10.0
browseVignettes('vcfR') # Documentation
citation('vcfR') # Citation
***** ***** ***** *****
-- 1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55) -------
Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
1. base::suppressMessages(Z <- extract_gt_tidy(vcf, format_fields = c("GT")))
15. vctrs::vec_default_ptype2(...)
16. vctrs::stop_incompatible_type(...)
17. vctrs:::stop_incompatible(...)
18. vctrs:::stop_vctrs(...)
-- 2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70) -----
Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
1. base::suppressMessages(Z <- extract_gt_tidy(vcf))
15. vctrs::vec_default_ptype2(...)
16. vctrs::stop_incompatible_type(...)
17. vctrs:::stop_incompatible(...)
18. vctrs:::stop_vctrs(...)
-- 3. Error: vcfR2tidy works (@test_vcfRtidy.R#81) ----------------------------
Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
1. vcfR::vcfR2tidy(vcfR_test, info_only = FALSE)
15. vctrs::vec_default_ptype2(...)
16. vctrs::stop_incompatible_type(...)
17. vctrs:::stop_incompatible(...)
18. vctrs:::stop_vctrs(...)
== testthat results ===========================================================
[ OK: 475 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ]
1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55)
2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70)
3. Error: vcfR2tidy works (@test_vcfRtidy.R#81)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-windows-ix86+x86_64
Version: 1.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [67s/72s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
>
> library("testthat")
> #library("vcfR")
> #
> #
> test_check("vcfR")
Loading required package: vcfR
***** *** vcfR *** *****
This is vcfR 1.10.0
browseVignettes('vcfR') # Documentation
citation('vcfR') # Citation
***** ***** ***** *****
── 1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55) ───────
Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
1. base::suppressMessages(Z <- extract_gt_tidy(vcf, format_fields = c("GT")))
15. vctrs::vec_default_ptype2(...)
16. vctrs::stop_incompatible_type(...)
17. vctrs:::stop_incompatible(...)
18. vctrs:::stop_vctrs(...)
── 2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70) ─────
Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
1. base::suppressMessages(Z <- extract_gt_tidy(vcf))
15. vctrs::vec_default_ptype2(...)
16. vctrs::stop_incompatible_type(...)
17. vctrs:::stop_incompatible(...)
18. vctrs:::stop_vctrs(...)
── 3. Error: vcfR2tidy works (@test_vcfRtidy.R#81) ────────────────────────────
Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
1. vcfR::vcfR2tidy(vcfR_test, info_only = FALSE)
15. vctrs::vec_default_ptype2(...)
16. vctrs::stop_incompatible_type(...)
17. vctrs:::stop_incompatible(...)
18. vctrs:::stop_vctrs(...)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 475 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ]
1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55)
2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70)
3. Error: vcfR2tidy works (@test_vcfRtidy.R#81)
Error: testthat unit tests failed
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.11.0
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-patched-solaris-x86
Version: 1.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [64s/69s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
>
> library("testthat")
> #library("vcfR")
> #
> #
> test_check("vcfR")
Loading required package: vcfR
***** *** vcfR *** *****
This is vcfR 1.10.0
browseVignettes('vcfR') # Documentation
citation('vcfR') # Citation
***** ***** ***** *****
── 1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55) ───────
Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
1. base::suppressMessages(Z <- extract_gt_tidy(vcf, format_fields = c("GT")))
15. vctrs::vec_default_ptype2(...)
16. vctrs::stop_incompatible_type(...)
17. vctrs:::stop_incompatible(...)
18. vctrs:::stop_vctrs(...)
── 2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70) ─────
Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
1. base::suppressMessages(Z <- extract_gt_tidy(vcf))
15. vctrs::vec_default_ptype2(...)
16. vctrs::stop_incompatible_type(...)
17. vctrs:::stop_incompatible(...)
18. vctrs:::stop_vctrs(...)
── 3. Error: vcfR2tidy works (@test_vcfRtidy.R#81) ────────────────────────────
Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
1. vcfR::vcfR2tidy(vcfR_test, info_only = FALSE)
15. vctrs::vec_default_ptype2(...)
16. vctrs::stop_incompatible_type(...)
17. vctrs:::stop_incompatible(...)
18. vctrs:::stop_vctrs(...)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 475 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ]
1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55)
2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70)
3. Error: vcfR2tidy works (@test_vcfRtidy.R#81)
Error: testthat unit tests failed
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.10.0
Check: installed package size
Result: NOTE
installed size is 6.3Mb
sub-directories of 1Mb or more:
libs 4.4Mb
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 1.10.0
Check: running tests for arch ‘i386’
Result: ERROR
Running 'testthat.R' [79s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
>
> library("testthat")
> #library("vcfR")
> #
> #
> test_check("vcfR")
Loading required package: vcfR
***** *** vcfR *** *****
This is vcfR 1.10.0
browseVignettes('vcfR') # Documentation
citation('vcfR') # Citation
***** ***** ***** *****
-- 1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55) -------
Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
1. base::suppressMessages(Z <- extract_gt_tidy(vcf, format_fields = c("GT")))
15. vctrs::vec_default_ptype2(...)
16. vctrs::stop_incompatible_type(...)
17. vctrs:::stop_incompatible(...)
18. vctrs:::stop_vctrs(...)
-- 2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70) -----
Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
1. base::suppressMessages(Z <- extract_gt_tidy(vcf))
15. vctrs::vec_default_ptype2(...)
16. vctrs::stop_incompatible_type(...)
17. vctrs:::stop_incompatible(...)
18. vctrs:::stop_vctrs(...)
-- 3. Error: vcfR2tidy works (@test_vcfRtidy.R#81) ----------------------------
Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
1. vcfR::vcfR2tidy(vcfR_test, info_only = FALSE)
15. vctrs::vec_default_ptype2(...)
16. vctrs::stop_incompatible_type(...)
17. vctrs:::stop_incompatible(...)
18. vctrs:::stop_vctrs(...)
== testthat results ===========================================================
[ OK: 475 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ]
1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55)
2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70)
3. Error: vcfR2tidy works (@test_vcfRtidy.R#81)
Error: testthat unit tests failed
Execution halted
Flavor: r-release-windows-ix86+x86_64
Version: 1.10.0
Check: running tests for arch ‘x64’
Result: ERROR
Running 'testthat.R' [86s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
>
> library("testthat")
> #library("vcfR")
> #
> #
> test_check("vcfR")
Loading required package: vcfR
***** *** vcfR *** *****
This is vcfR 1.10.0
browseVignettes('vcfR') # Documentation
citation('vcfR') # Citation
***** ***** ***** *****
-- 1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55) -------
Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
1. base::suppressMessages(Z <- extract_gt_tidy(vcf, format_fields = c("GT")))
15. vctrs::vec_default_ptype2(...)
16. vctrs::stop_incompatible_type(...)
17. vctrs:::stop_incompatible(...)
18. vctrs:::stop_vctrs(...)
-- 2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70) -----
Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
1. base::suppressMessages(Z <- extract_gt_tidy(vcf))
15. vctrs::vec_default_ptype2(...)
16. vctrs::stop_incompatible_type(...)
17. vctrs:::stop_incompatible(...)
18. vctrs:::stop_vctrs(...)
-- 3. Error: vcfR2tidy works (@test_vcfRtidy.R#81) ----------------------------
Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
1. vcfR::vcfR2tidy(vcfR_test, info_only = FALSE)
15. vctrs::vec_default_ptype2(...)
16. vctrs::stop_incompatible_type(...)
17. vctrs:::stop_incompatible(...)
18. vctrs:::stop_vctrs(...)
== testthat results ===========================================================
[ OK: 475 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ]
1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55)
2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70)
3. Error: vcfR2tidy works (@test_vcfRtidy.R#81)
Error: testthat unit tests failed
Execution halted
Flavor: r-release-windows-ix86+x86_64
Version: 1.10.0
Check: running tests for arch ‘i386’
Result: ERROR
Running 'testthat.R' [57s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
>
> library("testthat")
> #library("vcfR")
> #
> #
> test_check("vcfR")
Loading required package: vcfR
***** *** vcfR *** *****
This is vcfR 1.10.0
browseVignettes('vcfR') # Documentation
citation('vcfR') # Citation
***** ***** ***** *****
-- 1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55) -------
Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
1. base::suppressMessages(Z <- extract_gt_tidy(vcf, format_fields = c("GT")))
15. vctrs::vec_default_ptype2(...)
16. vctrs::stop_incompatible_type(...)
17. vctrs:::stop_incompatible(...)
18. vctrs:::stop_vctrs(...)
-- 2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70) -----
Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
1. base::suppressMessages(Z <- extract_gt_tidy(vcf))
15. vctrs::vec_default_ptype2(...)
16. vctrs::stop_incompatible_type(...)
17. vctrs:::stop_incompatible(...)
18. vctrs:::stop_vctrs(...)
-- 3. Error: vcfR2tidy works (@test_vcfRtidy.R#81) ----------------------------
Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
1. vcfR::vcfR2tidy(vcfR_test, info_only = FALSE)
15. vctrs::vec_default_ptype2(...)
16. vctrs::stop_incompatible_type(...)
17. vctrs:::stop_incompatible(...)
18. vctrs:::stop_vctrs(...)
== testthat results ===========================================================
[ OK: 475 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ]
1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55)
2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70)
3. Error: vcfR2tidy works (@test_vcfRtidy.R#81)
Error: testthat unit tests failed
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64
Version: 1.10.0
Check: running tests for arch ‘x64’
Result: ERROR
Running 'testthat.R' [61s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
>
> library("testthat")
> #library("vcfR")
> #
> #
> test_check("vcfR")
Loading required package: vcfR
***** *** vcfR *** *****
This is vcfR 1.10.0
browseVignettes('vcfR') # Documentation
citation('vcfR') # Citation
***** ***** ***** *****
-- 1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55) -------
Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
1. base::suppressMessages(Z <- extract_gt_tidy(vcf, format_fields = c("GT")))
15. vctrs::vec_default_ptype2(...)
16. vctrs::stop_incompatible_type(...)
17. vctrs:::stop_incompatible(...)
18. vctrs:::stop_vctrs(...)
-- 2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70) -----
Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
1. base::suppressMessages(Z <- extract_gt_tidy(vcf))
15. vctrs::vec_default_ptype2(...)
16. vctrs::stop_incompatible_type(...)
17. vctrs:::stop_incompatible(...)
18. vctrs:::stop_vctrs(...)
-- 3. Error: vcfR2tidy works (@test_vcfRtidy.R#81) ----------------------------
Can't combine `..1$tt` <logical> and `..2$tt` <character>.
Backtrace:
1. vcfR::vcfR2tidy(vcfR_test, info_only = FALSE)
15. vctrs::vec_default_ptype2(...)
16. vctrs::stop_incompatible_type(...)
17. vctrs:::stop_incompatible(...)
18. vctrs:::stop_vctrs(...)
== testthat results ===========================================================
[ OK: 475 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ]
1. Error: extract_gt_tidy works for GT element (@test_vcfRtidy.R#55)
2. Error: extract_gt_tidy works for all elements (@test_vcfRtidy.R#70)
3. Error: vcfR2tidy works (@test_vcfRtidy.R#81)
Error: testthat unit tests failed
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64