ActiveDriverWGS: A Driver Discovery Tool for Cancer Whole Genomes

A method for finding an enrichment of cancer simple somatic mutations (SNVs and Indels) in functional elements across the human genome. 'ActiveDriverWGS' detects coding and noncoding driver elements using whole genome sequencing data.

Version: 1.0.1
Depends: R (≥ 3.0.2)
Imports: BSgenome, BSgenome.Hsapiens.UCSC.hg19, Biostrings, GenomeInfoDb, GenomicRanges, IRanges, S4Vectors, plyr
Suggests: knitr, testthat, rmarkdown
Published: 2019-03-22
Author: Helen Zhu [aut, cre], Juri Reimand [aut]
Maintainer: Helen Zhu <helen.zhu at oicr.on.ca>
License: GPL-3
NeedsCompilation: no
Materials: README
CRAN checks: ActiveDriverWGS results

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Reference manual: ActiveDriverWGS.pdf
Vignettes: ActiveDriverWGS
Package source: ActiveDriverWGS_1.0.1.tar.gz
Windows binaries: r-devel: ActiveDriverWGS_1.0.1.zip, r-devel-gcc8: ActiveDriverWGS_1.0.1.zip, r-release: ActiveDriverWGS_1.0.1.zip, r-oldrel: ActiveDriverWGS_1.0.1.zip
OS X binaries: r-release: not available, r-oldrel: not available

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