PAFway: Pairwise Association of Functional Annotations

Finds pairs of functional annotations or gene ontology (GO) terms that are enriched within a directed network (such as a gene regulatory network). This works with or without edge weights and includes visualizations (both as a network where the functions are nodes and as a heatmap). PAFway is an acronym for Pairwise Associations of Functional annotations in biological networks and pathWAYs.

Version: 0.1.3
Imports: igraph, ggplot2, GGally, network, sna, scales, stats, grDevices
Suggests: knitr, gplots, rmarkdown
Published: 2020-02-05
Author: Daphne Ezer [aut, cre], Mahair Mahjoub [aut]
Maintainer: Daphne Ezer <daphne.ezer at york.ac.uk>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Materials: NEWS
CRAN checks: PAFway results

Downloads:

Reference manual: PAFway.pdf
Vignettes: PAFway
Package source: PAFway_0.1.3.tar.gz
Windows binaries: r-devel: PAFway_0.1.3.zip, r-devel-gcc8: PAFway_0.1.2.zip, r-release: PAFway_0.1.3.zip, r-oldrel: PAFway_0.1.3.zip
OS X binaries: r-release: PAFway_0.1.3.tgz, r-oldrel: PAFway_0.1.3.tgz
Old sources: PAFway archive

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