TBRDist: Rearrangement Distances Between Unrooted Phylogenetic Trees

Fast calculation of the Subtree Prune and Regraft (SPR), Tree Bisection and Reconnection (TBR) and Replug distances between unrooted trees, using the algorithms of Whidden and Matsen (2017) <arxiv:1511.07529>.

Version: 1.0.2
Depends: R (≥ 3.4.0)
Imports: ape, Rdpack, TreeDist, TreeTools (≥ 1.1.0)
LinkingTo: BH, Rcpp
Suggests: knitr, rmarkdown, testthat
Published: 2020-09-17
Author: Martin R. Smith ORCID iD [aut, cre, cph], Chris Whidden [cph]
Maintainer: Martin R. Smith <martin.smith at durham.ac.uk>
BugReports: https://github.com/ms609/TBRDist/issues/
License: GPL (≥ 3)
Copyright: Underlying C++ code copyright 2018 Chris Whidden.
URL: https://ms609.github.io/TBRDist/, https://github.com/ms609/TBRDist/, https://github.com/cwhidden/uspr/
NeedsCompilation: yes
SystemRequirements: C++11
Language: en-GB
Citation: TBRDist citation info
Materials: NEWS
CRAN checks: TBRDist results

Downloads:

Reference manual: TBRDist.pdf
Vignettes: Using TBRDist
Package source: TBRDist_1.0.2.tar.gz
Windows binaries: r-devel: TBRDist_1.0.2.zip, r-release: TBRDist_1.0.2.zip, r-oldrel: TBRDist_1.0.1.zip
macOS binaries: r-release: TBRDist_1.0.2.tgz, r-oldrel: TBRDist_1.0.2.tgz
Old sources: TBRDist archive

Linking:

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