VAM: Variance-Adjusted Mahalanobis

Contains logic for cell-specific gene set scoring of single cell RNA sequencing data.

Version: 1.1.0
Depends: R (≥ 3.6.0), MASS, Matrix
Imports: methods (≥ 3.6.0)
Suggests: Seurat (≥ 4.0.0), SeuratObject (≥ 4.0.0), sctransform (≥ 0.3.2)
Published: 2023-11-05
DOI: 10.32614/CRAN.package.VAM
Author: H. Robert Frost
Maintainer: H. Robert Frost <rob.frost at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
Copyright: Dartmouth College
NeedsCompilation: no
Materials: NEWS
In views: Omics
CRAN checks: VAM results


Reference manual: VAM.pdf
Vignettes: 10x PBMC 3k log normalization Hallmark collection example
10x PBMC 3k log normalization example
10x PBMC 3k SCTransform example
Seurat pbmc_small log normalization example
Seurat pbmc_small SCTransform example


Package source: VAM_1.1.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): VAM_1.1.0.tgz, r-oldrel (arm64): VAM_1.1.0.tgz, r-release (x86_64): VAM_1.1.0.tgz, r-oldrel (x86_64): VAM_1.1.0.tgz
Old sources: VAM archive

Reverse dependencies:

Reverse imports: CAMML, scaper, singleCellTK, STREAK


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