ggrasp: Gaussian-Based Genome Representative Selector with Prioritization

Given a group of genomes and their relationship with each other, the package clusters the genomes and selects the most representative members of each cluster. Additional data can be provided to the prioritize certain genomes. The results can be printed out as a list or a new phylogeny with graphs of the trees and distance distributions also available. For detailed introduction see: Thomas H Clarke, Lauren M Brinkac, Granger Sutton, and Derrick E Fouts (2018), GGRaSP: a R-package for selecting representative genomes using Gaussian mixture models, Bioinformatics, bty300, <doi:10.1093/bioinformatics/bty300>.

Version: 1.0
Depends: R (≥ 3.1.0)
Imports: ggplot2, mixtools, ape, bgmm, colorspace, methods
Published: 2018-07-01
Author: Thomas Clarke [aut, cre]
Maintainer: Thomas Clarke <tclarke at jcvi.org>
License: GPL-2
NeedsCompilation: no
Citation: ggrasp citation info
Materials: README NEWS
CRAN checks: ggrasp results

Downloads:

Reference manual: ggrasp.pdf
Package source: ggrasp_1.0.tar.gz
Windows binaries: r-devel: ggrasp_1.0.zip, r-devel-gcc8: ggrasp_1.0.zip, r-release: ggrasp_1.0.zip, r-oldrel: ggrasp_1.0.zip
OS X binaries: r-release: ggrasp_1.0.tgz, r-oldrel: ggrasp_1.0.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=ggrasp to link to this page.