kinship2: Pedigree Functions
Routines to handle family data with a pedigree object (2014, <doi:10.1159/000363105>). The initial purpose was to create correlation structures that describe family relationships such as kinship and identity-by-descent, which can be used to model family data in mixed effects models, such as in the coxme function. Also includes a tool for pedigree drawing which is focused on producing compact layouts without intervention. Recent additions include utilities to trim the pedigree object with various criteria, and kinship for the X chromosome.
||R (≥ 3.4.0), Matrix, quadprog
||graphics, stats, methods
||Jason Sinnwell [aut, cre],
Terry Therneau [aut],
Daniel Schaid [ctb],
Elizabeth Atkinson [ctb],
Carly Mester [ctb]
||Jason Sinnwell <sinnwell.jason at mayo.edu>
||GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
||ElstonStewart, FamAgg, GESE, MasterBayes, pedgene
||FamEvent, famSKATRC, fat2Lpoly, GENLIB, LCAextend, LRQMM, Mega2R, MESS, optiSel, paramlink, pedtools, ribd, RVS, SimRVPedigree, skater
||coxme, gap, Mangrove, pbatR, pedmod, simfam
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