onemap: Construction of Genetic Maps in Experimental Crosses: Full-Sib, RILs, F2 and Backcrosses

Analysis of molecular marker data from model (backcrosses, F2 and recombinant inbred lines) and non-model systems (i. e. outcrossing species). For the later, it allows statistical analysis by simultaneously estimating linkage and linkage phases (genetic map construction) according to Wu et al. (2002) <doi:10.1006/tpbi.2002.1577>. All analysis are based on multipoint approaches using hidden Markov models.

Version: 2.1.2
Depends: R (≥ 3.6.0)
Imports: ggplot2 (≥ 2.2.1), plotly (≥ 4.7.1), reshape2 (≥ 1.4.1), Rcpp (≥ 0.10.5), graphics, methods, stats, utils, grDevices, MDSMap
LinkingTo: Rcpp (≥ 0.10.5)
Suggests: qtl (≥ 1.36-6), knitr (≥ 1.10), rmarkdown, htmlwidgets, vcfR (≥ 1.6.0)
Published: 2019-09-19
Author: Gabriel Margarido [aut], Marcelo Mollinari [aut], Karl Broman [ctb], Rodrigo Amadeu [ctb], Cristiane Taniguti [ctb, cre], Augusto Garcia [aut, ctb], Getulio Ferreira [ctb]
Maintainer: Cristiane Taniguti <chtaniguti at usp.br>
BugReports: https://github.com/augusto-garcia/onemap/wiki
License: GPL-3
URL: https://github.com/augusto-garcia/onemap
NeedsCompilation: yes
Citation: onemap citation info
CRAN checks: onemap results

Downloads:

Reference manual: onemap.pdf
Vignettes: Inbred Based Populations
Introduction to R
Outcrossing Populations
Overview
Package source: onemap_2.1.2.tar.gz
Windows binaries: r-devel: onemap_2.1.2.zip, r-devel-gcc8: onemap_2.1.2.zip, r-release: onemap_2.1.2.zip, r-oldrel: onemap_2.1.1.zip
OS X binaries: r-release: onemap_2.1.2.tgz, r-oldrel: onemap_2.1.1.tgz
Old sources: onemap archive

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