The aim of this document is to keep track of the changes made to the
different versions of the R
package
pencal
.
The numbering of package versions follows the convention a.b.c, where a and b are non-negative integers, and c is a positive integer. When minor changes are made to the package, a and b are kept fixed and only c is increased. Major changes to the package, instead, are made apparent by changing a or b.
Each section of this document corresponds to a major change in the package - in other words, within a section you will find all those package versions a.b.x where a and b are fixed whereas x = 1, 2, 3, … Each subsection corresponds to a specific package version.
tau.age
argument to
simulate_prclmm_data
and
simulate_prclmm_data
fit_lmms
(row
181)survpred_prclmm
survpred_prclmm
fail when new data
for just 1 subject were supplied (added missing
drop = FALSE
)survpred_prcmlpmm
survpred_prc
replaced by two distinct
functions: survpred_prclmm
for the PRC-LMM model, and
survpred_prcmlpmm
for the PRC-MLPMM modelfit_lmms
is now more memory efficient
(keep.data = F
when calling lme)fit_mlpmms
is now faster (parallelization implemented
also before the CBOCP is started)pencox_baseline
and
performance_pencox_baseline
T
with
TRUE
)simulate_prcmlpmm_data
, fit_mlpmms
,
summarize_mlpmms
and fit_prcmlpmm
performance_prclmm
to
performance_prc
, and survpred_prclmm
to
survpred_prc
(the functions work both for the PRC-LMM, and
the PRC-MLPMM)survpred_prclmm
, which computes
predicted survival probabilities from the fitted PRC-LMM modelfitted_prclmm
data object and related
documentation (it is used in the examples of
performance_prclmm
)pencal
package.
It comprises the skeleton around which the rest of the R package will be
builtsimulate_t_weibull
and
simulate_prclmm_data
);fit_lmms
,
summarize_lmms
and fit_prclmm
);performance_prclmm
)R
package that is user-friendly,
comprehensive and well-documented is an effort that takes months,
sometimes even years. This package is currently under active
development, and many additional features and functionalities
(including vignettes!) will be added incrementally with the next
releases. If you notice a bug or something unclear in the documentation,
feel free to get in touch with the maintainer of the package!