perfectphyloR: Reconstruct Perfect Phylogenies from DNA Sequence Data

Reconstructs perfect phylogeny at a user-given focal point and to depict and test association in a genomic region based on the reconstructed partitions. Charith B Karunarathna and Jinko Graham (2019) <bioarXiv:10.1101/674523>.

Version: 0.1.3
Depends: R (≥ 3.4.0)
Imports: ape, HHG , dendextend, phytools, Rcpp (≥ 0.12.16)
LinkingTo: Rcpp, RcppArmadillo
Suggests: knitr, rmarkdown
Published: 2019-07-18
Author: Charith Karunarathna and Jinko Graham
Maintainer: Charith Karunarathna <ckarunar at sfu.ca>
License: GPL-2 | GPL-3 [expanded from: GNU General Public License]
NeedsCompilation: yes
Materials: README
CRAN checks: perfectphyloR results

Downloads:

Reference manual: perfectphyloR.pdf
Vignettes: perfectphyloR
Package source: perfectphyloR_0.1.3.tar.gz
Windows binaries: r-devel: perfectphyloR_0.1.3.zip, r-devel-gcc8: perfectphyloR_0.1.3.zip, r-release: perfectphyloR_0.1.3.zip, r-oldrel: perfectphyloR_0.1.3.zip
OS X binaries: r-release: perfectphyloR_0.1.3.tgz, r-oldrel: perfectphyloR_0.1.3.tgz

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