Allows for estimation of phylogenetic trees and networks
using Maximum Likelihood, Maximum Parsimony, distance methods and
Hadamard conjugation. Offers methods for tree comparison, model
selection and visualization of phylogenetic networks as described in
Schliep et al. (2017) <doi:10.1111/2041-210X.12760>.
| Version: |
2.8.0 |
| Depends: |
ape (≥ 5.5), R (≥ 4.1.0) |
| Imports: |
fastmatch, graphics, grDevices, igraph (≥ 1.0), Matrix, methods, parallel, quadprog, Rcpp, stats, utils |
| LinkingTo: |
Rcpp |
| Suggests: |
Biostrings, knitr, magick, prettydoc, rgl, rmarkdown, seqinr, seqLogo, tinytest, xtable |
| Published: |
2021-11-09 |
| Author: |
Klaus Schliep 
[aut, cre],
Emmanuel Paradis
[aut],
Leonardo de Oliveira Martins
[aut],
Alastair Potts [aut],
Tim W. White [aut],
Cyrill Stachniss [ctb],
Michelle Kendall [ctb],
Keren Halabi [ctb],
Richel Bilderbeek [ctb],
Kristin Winchell [ctb],
Liam Revell [ctb],
Mike Gilchrist [ctb],
Jeremy Beaulieu [ctb],
Brian O'Meara [ctb],
Long Qu [ctb] |
| Maintainer: |
Klaus Schliep <klaus.schliep at gmail.com> |
| BugReports: |
https://github.com/KlausVigo/phangorn/issues |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: |
https://github.com/KlausVigo/phangorn |
| NeedsCompilation: |
yes |
| Language: |
en-US |
| Citation: |
phangorn citation info |
| Materials: |
README NEWS |
| In views: |
Genetics, Phylogenetics |
| CRAN checks: |
phangorn results |