secsse: Several Examined and Concealed States-Dependent Speciation and Extinction

Simultaneously infers state-dependent diversification across two or more states of a single or multiple traits while accounting for the role of a possible concealed trait. See Herrera-Alsina et al. 2019 Systematic Biology 68: 317-328 <doi:10.1093/sysbio/syy057>.

Version: 2.1.7
Depends: R (≥ 3.5.0)
Imports: utils, DDD (≥ 4.0), ape, foreach, doParallel, apTreeshape, phylobase, geiger, deSolve
Suggests: diversitree, phytools, testthat, testit, knitr, rmarkdown
Enhances: doMC
Published: 2021-07-16
Author: Leonel Herrera Alsina [aut], Paul van Els [aut], Rampal S. Etienne ORCID iD [cre, aut]
Maintainer: Rampal S. Etienne <r.s.etienne at rug.nl>
License: GPL-3
NeedsCompilation: yes
CRAN checks: secsse results

Documentation:

Reference manual: secsse.pdf
Vignettes: "Using SecSSE ML search"

Downloads:

Package source: secsse_2.1.7.tar.gz
Windows binaries: r-devel: secsse_2.1.7.zip, r-release: secsse_2.1.7.zip, r-oldrel: secsse_2.1.7.zip
macOS binaries: r-release (arm64): secsse_2.1.7.tgz, r-release (x86_64): secsse_2.1.7.tgz, r-oldrel: secsse_2.1.7.tgz
Old sources: secsse archive

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