staRdom: PARAFAC Analysis of EEMs from DOM

This is a user-friendly way to run a parallel factor (PARAFAC) analysis (Harshman, 1971) <doi:10.1121/1.1977523> on excitation emission matrix (EEM) data from dissolved organic matter (DOM) samples (Murphy et al., 2013) <doi:10.1039/c3ay41160e>. The analysis includes profound methods for model validation. Some additional functions allow the calculation of absorbance slope parameters and create beautiful plots.

Version: 1.0.18
Depends: R (≥ 3.5), ggplot2 (≥ 2.2.1), eemR (≥ 1.0.1), parallel (≥ 3.5)
Imports: dplyr (≥ 0.8.1), tidyr (≥ 0.8.3), stringr (≥ 1.4.0), pracma (≥ 2.2.5), zoo (≥ 1.8-6), tibble (≥ 2.1.3), multiway (≥ 1.0-6), GGally (≥ 1.4), graphics (≥ 3.5), doParallel (≥ 1.0.14), drc (≥ 3.0-1), foreach (≥ 1.4.4), data.table (≥ 1.12.2), matrixStats (≥ 0.54.0), MBA (≥ 0.0-9), cdom (≥ 0.1.0), R.matlab (≥ 3.6.2), readr (≥ 1.3.1), gtools (≥ 3.8)
Suggests: plotly, xlsx, knitr, kableExtra, rmarkdown, knitcitations
Published: 2019-08-30
Author: Matthias Pucher [aut, cre], Daniel Graeber [aut, ctb], Stefan Preiner [ctb], Renata Pinto [ctb]
Maintainer: Matthias Pucher <matthias.pucher at wcl.ac.at>
BugReports: https://github.com/MatthiasPucher/staRdom/issues
License: AGPL
URL: https://cran.r-project.org/package=staRdom
NeedsCompilation: no
Citation: staRdom citation info
Materials: README
CRAN checks: staRdom results

Downloads:

Reference manual: staRdom.pdf
Vignettes: Correcting raw data, calculating peaks and indices in EEMS and absorbance (slope) parameters
PARAFAC analysis of EEM data to separate DOM components
Package source: staRdom_1.0.18.tar.gz
Windows binaries: r-devel: staRdom_1.0.18.zip, r-release: staRdom_1.0.18.zip, r-oldrel: staRdom_1.0.18.zip
OS X binaries: r-release: staRdom_1.0.18.tgz, r-oldrel: staRdom_1.0.18.tgz
Old sources: staRdom archive

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