tidyMicro

The goal of tidyMicro is to provide a cohesive pipeline for microbiome data analysis and visualization.

Installation

You can install the released version of tidyMicro from CRAN with:

install.packages("tidyMicro")

Main Features

• Merge any number OTU tables with clinical data into one tidy data set

• Data visualization for exploration

• Calculate, analyze, and visualize diversity measures

• Fit negative binomial, beta binomial, rank sum, and presence absence models

• Create stacked bar charts based on negative binomial and beta binomial model estimates

• Longitudinal PCA plots