treestats: Phylogenetic Tree Statistics

Collection of phylogenetic tree statistics, collected throughout the literature. All functions have been written to maximize computation speed. The package includes umbrella functions to calculate all statistics, all balance associated statistics, or all branching time related statistics. Furthermore, the 'treestats' package supports summary statistic calculations on Ltables, provides speed-improved coding of branching times, Ltable conversion and includes algorithms to create intermediately balanced trees. Full description can be found in Janzen (2023) <doi:10.1101/2024.01.24.576848>.

Version: 1.0.5
Depends: Rcpp
Imports: ape, nloptr, RSpectra, Matrix
LinkingTo: Rcpp, nloptr
Suggests: phyloTop, testthat, DDD, geiger, nodeSub, nLTT, castor, adephylo, ggplot2, tibble, picante, treebalance, RPANDA, lintr, rmarkdown, knitr
Published: 2024-01-30
DOI: NA
Author: Thijs Janzen ORCID iD [cre, aut]
Maintainer: Thijs Janzen <thijsjanzen at gmail.com>
BugReports: https://github.com/thijsjanzen/treestats/issues
License: GPL-3
URL: https://github.com/thijsjanzen/treestats
NeedsCompilation: yes
Citation: treestats citation info
Materials: README NEWS
In views: Phylogenetics
CRAN checks: treestats results

Documentation:

Reference manual: treestats.pdf
Vignettes: demonstration

Downloads:

Package source: treestats_1.0.5.tar.gz
Windows binaries: r-devel: treestats_1.0.5.zip, r-release: treestats_1.0.5.zip, r-oldrel: treestats_1.0.5.zip
macOS binaries: r-release (arm64): treestats_1.0.5.tgz, r-oldrel (arm64): treestats_1.0.5.tgz, r-release (x86_64): treestats_1.0.5.tgz, r-oldrel (x86_64): treestats_1.0.5.tgz
Old sources: treestats archive

Reverse dependencies:

Reverse imports: secsse

Linking:

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