Enables users-customized data retrieval, processing, analysis, and data visualization of molecular quantitative trait locus and gene expression data from public resources through the application programming interface <https://gtexportal.org/home/api-docs/index.html> of 'GTEx' and <http://www.ebi.ac.uk/eqtl/api> of 'eQTL cagalogue'.
| Version: | 1.4.2 |
| Depends: | R (≥ 4.00) |
| Imports: | BiocGenerics, cowplot (≥ 1.1.1), curl (≥ 4.3.2), data.table (≥ 1.14.2), DBI, SummarizedExperiment, GenomeInfoDb, GenomicFeatures, GenomicRanges, ggplot2 (≥ 3.3.6), ggrepel, IRanges, jsonlite (≥ 1.7.2), viridis, RMySQL, stringr (≥ 1.4.0), utils (≥ 4.0.3) |
| Suggests: | VariantAnnotation, TxDb.Hsapiens.UCSC.hg38.knownGene, PupillometryR, coloc, knitr, rtracklayer, usethis, ggridges, CMplot, R.utils |
| Published: | 2023-05-04 |
| Author: | Ruofan Ding [aut, cre], Xudong Zou [aut, ctb], Yangmei Qin [aut, ctb], Gao Wang [aut, ctb], Lei Li [aut, ctb, cph] |
| Maintainer: | Ruofan Ding <dingruofan1 at foxmail.com> |
| BugReports: | https://github.com/dingruofan/xQTLbiolinks/issues |
| License: | GPL (≥ 3) |
| URL: | https://github.com/dingruofan/xQTLbiolinks |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | xQTLbiolinks results |
| Reference manual: | xQTLbiolinks.pdf |
| Vignettes: |
Quick_start query_download visualization |
| Package source: | xQTLbiolinks_1.4.2.tar.gz |
| Windows binaries: | r-devel: xQTLbiolinks_1.4.2.zip, r-release: xQTLbiolinks_1.4.2.zip, r-oldrel: xQTLbiolinks_1.4.2.zip |
| macOS binaries: | r-release (arm64): xQTLbiolinks_1.4.2.tgz, r-oldrel (arm64): xQTLbiolinks_1.4.2.tgz, r-release (x86_64): xQTLbiolinks_1.4.2.tgz, r-oldrel (x86_64): xQTLbiolinks_1.4.2.tgz |
| Old sources: | xQTLbiolinks archive |
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